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Detailed information on CNT30512942


BLAST search results

BLAST vs Swiss-Prot:
sp|P36181|HSP80_SOLLC, E-value = 1e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Juglans regiaOryza sativa25.8432.6781.68131forward
CNT30523385Juglans regiaSetaria italica41.2227.4381.82209forward
CNT30402735Juglans regiaBeta vulgaris39.8414.8387.13202forward
CNT30526133Juglans regiaPhaseolus vulgaris13.813591.4370forward
CNT30631181Juglans regiaVigna unguiculata41.0339.187.02208forward
CNT30712364Juglans regiaGlycine max66.4784.8986.35337forward
CNT3094731Juglans regiaSolanum tuberosum65.8822.2584.73334forward
CNT30566784Juglans regiaActinidia chinensis65.6843.8283.48333forward
CNT30554909Juglans regiaOryza glaberrima38.2650.3980.93194forward
CNT30145759Juglans regiaMedicago truncatula41.8155.9483.02212forward
CNT3061941Juglans regiaArabidopsis lyrata19.5338.0885.8699forward
CNT30613762Juglans regiaArabis alpina60.757782.14308forward
CNT30652959Juglans regiaRosa chinensis41.0343.2487.5208forward
CNT30625276Juglans regiaDaucus carota43.7915.7983.78222forward
CNT30348495Juglans regiaEragrostis tef41.2270.1383.25209forward
CNT30366950Juglans regiaSorghum bicolor41.2224.4282.78209forward
CNT30154320Juglans regiaPrunus persica22.2930.6286.73113forward
CNT30418103Juglans regiaPapaver somniferum61.7480.2684.03313forward
CNT3022206Juglans regiaPopulus trichocarpa65.0960.6684.85330forward
CNT30103468Juglans regiaOryza rufipogon38.2637.0980.93194forward

Expression of CNT30512942

Peptides detected in this lncRNA

>peptide 1 (71 aa)
ISSVFLIQIGFCLLTKDHSWDTSLIFFFFFSSFSFSSSTSSTLPSSSFLSSSSSSSEISFSVVFSIQREIG*

>peptide 2 (81 aa)
NLLSLPHPDWLLLVNQGPLMGHLLDLLLFLFFFLFFFINILNLTFLILLIFLILIIRNFLLSGLLNPERNWVANKFRVLLN*

Sequence

>CNT30512942
TAATCTCCTCAGTCTTCCTCATCCAGATTGGCTTTTGCTTGTTAACCAAGGACCACTCATGGGACACCTCCTTGATCTTCTTCTTTTTCTTTTCTTCTTT
CTCTTTTTCTTCATCAACATCCTCAACCTTACCTTCCTCATCCTTCTTATCTTCCTCATCCTCATCATCAGAAATTTCCTTCTCAGTGGTCTTCTCAATC
CAGAGAGAAATTGGGTAGCTAATAAATTCAGAGTGCTTCTTAATTAAGTCCTTCAACCGCCGCTCCTCAAGGTTTTCACCAGAGTTATCTCTAGTGACAG
TGAATGACCCACCAGCTTGGGACTCCCAGACATATTGCTCATCGTCATTGTGTTTAGTGGTGACAATGACCTTCTCAGCGACAAGATATGCTGAGTAGAA
ACCAACACCAAATTGTCCAATCATACTCACATCGGCCCCAGCGGCAAGGGCTTCCATGAACTCCTTGGTTCCAGACCTAGCAATGGTACCCAGGTTGTTC
ACCAAAT