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Detailed information on CNT30366950


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 3e-66

BLAST vs NONCODE:
NONBNAT003938, E-value = 2e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Sorghum bicolorOryza sativa19.6341.994.05168forward
CNT30675852Sorghum bicolorSetaria viridis42.6471.9991.78365forward
CNT30523385Sorghum bicolorSetaria italica31.0734.9191.35266forward
CNT30512942Sorghum bicolorJuglans regia24.4241.2282.78209forward
CNT30377298Sorghum bicolorArabidopsis thaliana8.0627.7188.4169forward
CNT3071729Sorghum bicolorQuercus suber15.0746.0783.72129forward
CNT30631099Sorghum bicolorVigna unguiculata19.5126.9485.03167forward
CNT30712364Sorghum bicolorGlycine max24.0751.8981.07206forward
CNT30187559Sorghum bicolorSecale cereale19.9825.6487.13171forward
CNT30224390Sorghum bicolorHordeum vulgare19.9831.0987.13171forward
CNT30554909Sorghum bicolorOryza glaberrima21.6148.0590.81185forward
CNT3061941Sorghum bicolorArabidopsis lyrata10.9836.1587.2394forward
CNT30613762Sorghum bicolorArabis alpina21.1445.2586.19181forward
CNT30468549Sorghum bicolorSaccharum spontaneum13.3249.5799.12114forward
CNT30652959Sorghum bicolorRosa chinensis21.2637.8484.07182forward
CNT30721901Sorghum bicolorTriticum spelta19.9833.5388.3171forward
CNT30348495Sorghum bicolorEragrostis tef28.9783.2291.53248forward
CNT30596757Sorghum bicolorOryza meridionalis11.5742.6797.9899forward
CNT30371008Sorghum bicolorOryza glumipatula11.138.4694.7495reverse complement
CNT30154320Sorghum bicolorPrunus persica10.7524.9386.9692forward
CNT30418103Sorghum bicolorPapaver somniferum19.1642.0584.15164forward
CNT30107294Sorghum bicolorOryza longistaminata11.6836.7695100forward
CNT3022206Sorghum bicolorPopulus trichocarpa24.1838.0583.57207forward
CNT30103468Sorghum bicolorOryza rufipogon21.6135.3791.35185forward
CNT30584451Sorghum bicolorEchinochloa crusgalli19.6331.3495.83168forward
CNT30175658Sorghum bicolorVigna angularis10.0534.8288.3786forward
CNT30558210Sorghum bicolorPanicum hallii11.5748.0696.9799forward

Expression of CNT30366950

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MMSESSWLISAWKANVSVSEAMAGETTFPDARRARRAGGGGGLRAEEKCTRRGFVGRRDG

>peptide 2 (49 aa)
MDTSAPAASASMNSFVPDRAIVPRLFTRSDLVMPMPLSMMVSVKISLLE*

>peptide 3 (48 aa)
MSVSASGASSSSMLRPSLSMRWMRLPKVLGSSRLKPEVSRVTVKEPPA*

Sequence

>CNT30366950
GATCGAGGAAAACAACAAAAAATTAAAATAATTGAAAGACAGCAGGATAAACGGATAATAGCAGCACTATTATACCAACATTAACGTACTTAGTTCGATA
ACACACGCATCCAGCCCCAGCCCCATTACATTGCAGGCTAGCAAAAGTAAACCACACAAAATAAACCGAGATGTTCAGACACGCTCTTCAGCCGGGACAC
AGGGTACCCCAGGCTTAGTCGACCTCCTCCATCTTGCTCTCGCCGGCGTCGTCCTCCAGAGGGGGCATGTCAGTGTCAGCCTCCGGGGCCTCGTCCTCGT
CAATGCTCAGGCCCAGCTTGAGCATGCGGTGGATGCGGCTGCCGAAGGTGTTGGGGTCGTCGAGGCTGAAGCCGGAGGTGTCACGTGTGACAGTGAAGGA
GCCACCGGCCTGAGACTCCCACACATACTGCTCATCATCGTTGTGCTTGGTGGTCACAACGACCCTCTCAGCAACAAGGTAGGCCGAGTAGAAACCAACA
CCGAACTGGCCAATCATGGACACATCGGCACCAGCAGCCAGTGCCTCCATGAACTCCTTTGTGCCGGACCGGGCAATAGTACCAAGGTTGTTCACAAGGT
CTGACTTGGTCATGCCAATGCCACTGTCAATGATGGTCAGCGTGAAGATCTCCTTGTTGGAGTAGAAGGTGTTGATGATGAGCGAGAGCAGCTGGTTGAT
CTCCGCCTGGAAGGCGAACGTCTCCGTCTCCGAGGCCATGGCTGGCGAGACGACCTTCCCGGACGCTAGGAGAGCGCGGCGAGCAGGCGGCGGCGGCGGC
TTGAGGGCAGAGGAGAAGTGCACGAGACGAGGGTTTGTGGGACGACGAGATGGGAC