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Detailed information on CNT30652959


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 2e-61

BLAST vs NONCODE:
NONBNAT003938, E-value = 2e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Rosa chinensisOryza sativa28.2733.9284.56136forward
CNT30675606Rosa chinensisSetaria viridis39.0928.2385.11188forward
CNT30523385Rosa chinensisSetaria italica39.0924.6785.11188forward
CNT30512942Rosa chinensisJuglans regia43.2441.0387.5208forward
CNT3019808Rosa chinensisCitrullus lanatus30.3521.7981.51146forward
CNT3071729Rosa chinensisQuercus suber40.757083.16196forward
CNT30631181Rosa chinensisVigna unguiculata40.7536.8487.24196forward
CNT30712364Rosa chinensisGlycine max45.7455.4291.36220forward
CNT3094731Rosa chinensisSolanum tuberosum43.4513.9286.6209forward
CNT30566784Rosa chinensisActinidia chinensis41.5826.3285200forward
CNT30554909Rosa chinensisOryza glaberrima28.4835.5883.94137forward
CNT30145759Rosa chinensisMedicago truncatula44.2856.284.04213forward
CNT3061941Rosa chinensisArabidopsis lyrata20.5838.0887.8899forward
CNT30613762Rosa chinensisArabis alpina41.1649.584.85198forward
CNT30625276Rosa chinensisDaucus carota65.2822.3382.17314forward
CNT30348495Rosa chinensisEragrostis tef38.4662.0886.49185forward
CNT30366950Rosa chinensisSorghum bicolor37.8421.2684.07182forward
CNT30154320Rosa chinensisPrunus persica27.6536.0486.47133forward
CNT30418103Rosa chinensisPapaver somniferum41.3751.0390.95199forward
CNT3022206Rosa chinensisPopulus trichocarpa44.0738.9786.79212forward
CNT30103468Rosa chinensisOryza rufipogon28.4826.284.67137forward

Expression of CNT30652959

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MTIHEKFPGFSSFSSPPSPSLRQLPLPFLPLPSFLLHPHHQKSPSQCAS*

>peptide 2 (84 aa)
MRNFLDFLLFLLLLLLLFVNFLYLSFLFLLFFFILIIRNLLLSVLLDQILESALFKVLKLVLLEVEADPCTPAKRLTRVPGNCE*

Sequence

>CNT30652959
TTTTGCTTGTTAACCAATGACCATTCATGAGAAATTTCCTGGATTTTCTTCTTTTTCTTCTCCTCCTTCTCCTTCTCTTCGTCAACTTCCTCTACCTTTC
CTTCCTCTTCCTTCTTTTCTTCTTCATCCTCATCATCAGAAATCTCCTTCTCAGTGTGCTTCTTGATCAAATCCTTGAGTCTGCGCTCTTCAAGGTACTC
AAGTTGGTCCTCCTTGAGGTGGAGGCAGATCCTTGTACCCCTGCCAAGAGGCTCACCAGAGTCCCTGGTAACTGTGAATGATCCTCCAGCTTGAGACTCC
CAGATGTACTGCTCATCATCATTGTGCTTGGCGGTGACAATGACCTTCTCAGCAACAAGATATGCAGAGTAGAACCCAACACCAAACTGCCCAATCATGC
TAACATCAGCACCAGCAGCCAAGGCTTCCATGAATTCCTTGGTTCCAGACCTTGCAATGGTACCGAGGTTGTTGACCAAAT