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Detailed information on CNT30299505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Triticum aestivumOryza sativa13.4636.6687.07147forward
CNT30523385Triticum aestivumSetaria italica14.120.2189.61154forward
CNT30554909Triticum aestivumOryza glaberrima14.14088.31154forward
CNT30348495Triticum aestivumEragrostis tef13.7450.3488150forward
CNT30363115Triticum aestivumSorghum bicolor23.988.1887.74261forward
CNT30103468Triticum aestivumOryza rufipogon14.129.4587.66154forward

Expression of CNT30299505

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MPMPLSTIVSVLVALSGMMWMKSSGCASSLLLSVRLSN

>peptide 2 (37 aa)
MQCRHSCHKIIQFRSGTSQTSNRLQVKCTEPTSRHEE*

Sequence

>CNT30299505
CAGATATGTAATTCCATGATACAGTATTACAATTCAAACTGATAATTGCAGGAGGCCAGAATTATAAGATGTAACACAGAACATCCAAAGCAGTAATTAA
AAGAGGGCCAATCGACGAGGATGAGTTAATCCATGCATTGCTTAAATATGAGAGCATTAGAATACAGTTACCAAAAGCACATCATCAATTTAATGATTTC
ACAGTCAAATCTAAAGTAATAATACTATCAATCATGGTTAAAATGGTTGGGACGTCACTGATATTTACACTAGGCTACATATAATACACACAGCACAGGT
CTGAAACGAGCTGAGTCCAGGAATGATAAAATTACTGGTATCAAATTAATACAGTACTATCCCAATACATACAACAAGCTAGTTAAGCAGTGCAGCCTTC
CATATCTGTACATACACTACTAATCACATTACCAAAAACTTCCGCATAAATGACAAGTCAACCATGCTAATGGATAACAGAATTTAGCTCATGCTGCAGA
ACTATTGAAACAAAACCATACAGTTCAGATCGAGATTAGCCAATCTAGCAAACTATTTTAAGCACAAAATCACATCAAGCCATGGACAGTAAGCAAATAA
GTTTAGAAGGCTTGGACTGCATAGACAAGTTGATCACGGAACTAACAGAGTAAAGCTCATGCAGTGCAGACATAGCTGCCACAAAATCATACAGTTCAGA
TCGGGAACAAGTCAAACAAGCAACCGACTACAGGTAAAGTGCACAGAGCCTACATCAAGACATGAAGAGTAAGCCAATCACAGTATAAGAGGCTTGGACT
GCATACCTGGTCGTCCTTGAGGTAGAGGACCATCTTGGTACCCCTGCCGAGCTGCTCCCCAGACGTATCACGAGTGACGGTGAAGGAGCCACCGGCCTGG
GACTCCCACACGTACTGCTCGTCGTCGTTGTGCTTGGTGGTGACGACAACCCTCTCGGCGACGAGGTCCGACTTGGTCATGCCAATGCCGCTGTCGACGA
TCGTGAGCGTGTTGGTCGCCTTGTCGGGGATGATGTGGATGAAGAGCTCGGGCTGCGCATCGAGCTTGCTCTTGTCCGTGAGGCTCTCGAAC