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Detailed information on CNT30695408


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 8e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675843Oryza sativaSetaria viridis51.8749.4189.9208forward
CNT30523621Oryza sativaSetaria italica53.6232.9291.16215forward
CNT30512942Oryza sativaJuglans regia32.9226.0490.15132forward
CNT3019808Oryza sativaCitrullus lanatus36.6621.9489.8147forward
CNT30729348Oryza sativaCorchorus capsularis25.6911.3883.5103forward
CNT3071729Oryza sativaQuercus suber50.6272.581.28203forward
CNT30402735Oryza sativaBeta vulgaris53.3715.7183.64214forward
CNT30526133Oryza sativaPhaseolus vulgaris16.963495.5968forward
CNT30631099Oryza sativaVigna unguiculata37.1624.0385.91149forward
CNT30712340Oryza sativaGlycine max91.776479.62368forward
CNT30158908Oryza sativaPistacia vera35.668.7581.12143forward
CNT3094731Oryza sativaSolanum tuberosum29.437.8688.14118forward
CNT30177652Oryza sativaSecale cereale21.26.9887.0685reverse complement
CNT30299505Oryza sativaTriticum aestivum36.6613.4687.07147forward
CNT30566784Oryza sativaActinidia chinensis33.9217.8986.76136forward
CNT30554909Oryza sativaOryza glaberrima52.8755.0691.04212forward
CNT30145759Oryza sativaMedicago truncatula37.1639.3181.21149forward
CNT30613762Oryza sativaArabis alpina25.6925.7589.32103forward
CNT30652959Oryza sativaRosa chinensis33.9228.2784.56136forward
CNT30204348Oryza sativaHelianthus annuus25.6932.3985.44103forward
CNT30625276Oryza sativaDaucus carota24.446.9787.7698forward
CNT30348495Oryza sativaEragrostis tef53.6272.1589.77215forward
CNT30366950Oryza sativaSorghum bicolor41.919.6394.05168forward
CNT30154320Oryza sativaPrunus persica67.8373.7183.82272forward
CNT30418103Oryza sativaPapaver somniferum33.1734.187.22133forward
CNT30704690Oryza sativaPrunus avium88.0317.3784.42353forward
CNT3051689Oryza sativaAmborella trichopoda26.4315.6885.85106forward
CNT3022206Oryza sativaPopulus trichocarpa28.9321.3287.07116forward
CNT30103468Oryza sativaOryza rufipogon87.5367.1191.45351forward

Expression of CNT30695408

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LDLLLFLLLFFLLFINILNLALLSILLLFLIFIIRNFLLSGLLSP*

>peptide 2 (49 aa)
LIFFFFFSFSSFSSSTSSTLPSSASFFSSSSSSSEISFSVVFSVHREIG*

Sequence

>CNT30695408
CCTTGATCTTCTTCTTTTTCTTCTCCTTTTCTTCCTTCTCTTCATCAACATCCTCAACCTTGCCCTCCTCAGCATCCTTCTTCTCTTCCTCATCTTCATC
ATCAGAAATTTCCTTCTCAGTGGTCTTCTCAGTCCATAGAGAGATAGGGTAGCTGATAAACTCAGAGTGCTTCTTGATCAGGTCCTTGAGGTAGAGGGTG
ATCTTAGTACCCCTCCCAAGCTGCTCCCCAGATGTGTCACGTGTGACAGTGAAGGACCCACCAGCCTGAGACTCCCACACATACTGCTCGTCATCGTTGT
GCTTGGTGGTCACAACTACTCTCTCGGCAACAAGGTAGGCAGAGTAGAATCCAACACCGAACTGACCAATCATGGACACATCAGCACCAGCAGCCAGTGC
C