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Detailed information on CNT30613762


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Arabis alpinaOryza sativa37.7537.6683.44151forward
CNT30675852Arabis alpinaSetaria viridis41.7532.9485.63167forward
CNT30523385Arabis alpinaSetaria italica41.7521.9285.03167forward
CNT30512942Arabis alpinaJuglans regia70.2555.4281.49281forward
CNT3071729Arabis alpinaQuercus suber5071.4380.5200forward
CNT30402735Arabis alpinaBeta vulgaris52.515.4285.71210forward
CNT30631181Arabis alpinaVigna unguiculata53.2540.0484.98213forward
CNT30712364Arabis alpinaGlycine max72.573.0585.86290forward
CNT30158908Arabis alpinaPistacia vera5112.4885.78204forward
CNT3094731Arabis alpinaSolanum tuberosum72.519.3286.21290forward
CNT30566784Arabis alpinaActinidia chinensis70.2536.9784.34281forward
CNT30554909Arabis alpinaOryza glaberrima48.7550.6584.62195forward
CNT30145759Arabis alpinaMedicago truncatula5052.7783200forward
CNT3061941Arabis alpinaArabidopsis lyrata24.7538.0895.9699forward
CNT30652959Arabis alpinaRosa chinensis49.541.1684.85198forward
CNT30204348Arabis alpinaHelianthus annuus18.7523.5885.3375forward
CNT30625276Arabis alpinaDaucus carota54.2515.4382.49217forward
CNT30348495Arabis alpinaEragrostis tef41.7556.0485.03167forward
CNT30366950Arabis alpinaSorghum bicolor45.2521.1486.19181forward
CNT30154320Arabis alpinaPrunus persica20.7522.4986.7583forward
CNT30418103Arabis alpinaPapaver somniferum69.7571.5487.1279forward
CNT30704690Arabis alpinaPrunus avium54.2510.6884.33217forward
CNT3022206Arabis alpinaPopulus trichocarpa67.2549.4585.87269forward
CNT30103468Arabis alpinaOryza rufipogon48.7537.2884.62195forward

Expression of CNT30613762

Peptides detected in this lncRNA

>peptide 1 (41 aa)
SSFSFSSSTSSTFPSSSFFSSSSSSSEISFSMVFSTQREMG*

>peptide 2 (42 aa)
PLFLSPHLLPQPFLPHPSSLPLPHHLRSPSQWSSQPKERWGS*

>peptide 3 (55 aa)
MNSECFLTKSLRRRSSRTSPEVSLVTVKDPPAWDSHTYCSSSLCFVMTTTFSATK*

Sequence

>CNT30613762
CTCCTCTTTTTCTTTCTCCTCATCTACTTCCTCAACCTTTCCTTCCTCATCCTTCTTCTCTTCCTCTTCCTCATCATCTGAGATCTCCTTCTCAATGGTC
TTCTCAACCCAAAGAGAGATGGGGTAGCTGATGAACTCAGAGTGCTTCTTAACCAAATCCTTAAGACGGCGCTCTTCAAGGACCTCACCAGAGGTGTCCC
TGGTCACAGTGAAGGATCCTCCGGCCTGGGACTCCCACACATACTGCTCATCATCATTATGCTTCGTGATGACAACAACCTTCTCAGCCACCAAGTAAGC
TGAGTAGAAACCAACACCAAACTGTCCAATCATGCTGACATCAGCACCAGCAGCCAAAGCCTCCATGAACTCCTTGGTACCGGACCTAGCAATTGTTCCC