Detailed information on CNT3071729


BLAST search results

BLAST vs Swiss-Prot:
sp|P51819|HSP83_IPONI, E-value = 2e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Quercus suberOryza sativa72.550.6281.28203forward
CNT30675843Quercus suberSetaria viridis44.6429.6984.8125forward
CNT30523385Quercus suberSetaria italica44.6416.484125forward
CNT30532263Quercus suberEucalyptus grandis47.520.9485.71133reverse complement
CNT30517803Quercus suberJuglans regia10029.5488.93280forward
CNT30402735Quercus suberBeta vulgaris73.5715.1286.89206forward
CNT30631181Quercus suberVigna unguiculata78.9341.5485.52221forward
CNT30712364Quercus suberGlycine max78.9355.6783.71221forward
CNT30158908Quercus suberPistacia vera96.4316.5283.7270forward
CNT3098657Quercus suberSolanum tuberosum94.2945.1384.47264forward
CNT30554909Quercus suberOryza glaberrima74.6454.2981.34209forward
CNT30145759Quercus suberMedicago truncatula72.8653.8380.39204forward
CNT30613762Quercus suberArabis alpina71.435080.5200forward
CNT30652959Quercus suberRosa chinensis7040.7583.16196forward
CNT30625276Quercus suberDaucus carota89.6417.8581.67251forward
CNT30348495Quercus suberEragrostis tef68.2164.0981.15191forward
CNT30366950Quercus suberSorghum bicolor46.0715.0783.72129forward
CNT30418103Quercus suberPapaver somniferum70.7150.7781.31198forward
CNT30704690Quercus suberPrunus avium58.218.0285.28163forward
CNT3022206Quercus suberPopulus trichocarpa53.5727.5780.67150forward
CNT30103468Quercus suberOryza rufipogon72.538.8181.77203forward

Expression of CNT3071729

Peptides detected in this lncRNA

>peptide 1 (30 aa)
VLLEEECDLGTPTKLLSINIPCHSEGTTSL*

>peptide 2 (53 aa)
WSSLRKSVILVPLPSCSPLTSLVTVKEPPACDSQMYCSSSLCFVVTITLSATR*

Sequence

>CNT3071729
TGGTCCTCCTTGAGGAAGAGTGTGATCTTGGTACCCCTACCAAGTTGCTCTCCATTAACATCCCTTGTCACAGTGAAGGAACCACCAGCTTGTGATTCCC
AAATGTACTGTTCATCGTCATTGTGCTTTGTGGTCACAATAACCCTCTCGGCAACAAGGTAAGCCGAGTAAAACCCAACACCAAATTGACCAATCATGCT
CACATCAGCTCCGGCCTGCAATGCCTCCATAAATTCCTTGGTCCCAGACCTCGCAATTGTACCCAAATTGTTCACCAAAT