Detailed information on CNT3061941


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675606Arabidopsis lyrataSetaria viridis36.1514.1188.394forward
CNT30523385Arabidopsis lyrataSetaria italica36.1512.3488.394forward
CNT30512942Arabidopsis lyrataJuglans regia38.0819.5385.8699forward
CNT30282455Arabidopsis lyrataChenopodium quinoa23.084.2986.6760forward
CNT30402735Arabidopsis lyrataBeta vulgaris37.697.287.7698forward
CNT30631099Arabidopsis lyrataVigna unguiculata31.1513.0688.8981forward
CNT30712364Arabidopsis lyrataGlycine max3019.6591.0378forward
CNT30158908Arabidopsis lyrataPistacia vera27.314.3587.3271forward
CNT3094731Arabidopsis lyrataSolanum tuberosum38.086.689.999forward
CNT30566784Arabidopsis lyrataActinidia chinensis36.5412.588.4295forward
CNT30554909Arabidopsis lyrataOryza glaberrima36.5424.6883.1695forward
CNT30145759Arabidopsis lyrataMedicago truncatula3020.5889.7478forward
CNT30311909Arabidopsis lyrataCamelina sativa23.4612.986.8961forward
CNT30613762Arabidopsis lyrataArabis alpina38.0824.7595.9699forward
CNT30468549Arabidopsis lyrataSaccharum spontaneum20.3823.0488.6853forward
CNT30652959Arabidopsis lyrataRosa chinensis38.0820.5887.8899forward
CNT30625276Arabidopsis lyrataDaucus carota35.386.5486.9692forward
CNT30348495Arabidopsis lyrataEragrostis tef37.6932.8986.7398forward
CNT30366950Arabidopsis lyrataSorghum bicolor36.1510.9887.2394forward
CNT30371008Arabidopsis lyrataOryza glumipatula20.3821.4688.6853reverse complement
CNT30418103Arabidopsis lyrataPapaver somniferum35.3823.5991.392forward
CNT30704690Arabidopsis lyrataPrunus avium31.153.9988.8981forward
CNT30107294Arabidopsis lyrataOryza longistaminata20.3819.4988.6853forward
CNT3022206Arabidopsis lyrataPopulus trichocarpa38.0818.288.8999forward
CNT30103468Arabidopsis lyrataOryza rufipogon36.5418.1684.2195forward

Expression of CNT3061941

Peptides detected in this lncRNA

>peptide 1 (78 aa)
LLSNQVSRVETNTKLSNHTDIGTSSQSLHELLESIDDKGEKLIDLSLEGKRLYVRHHDPGVFLLTIGKSKKQRKIDET*

Sequence

>CNT3061941
ACCTTCTCAGCAACCAAGTAAGCAGAGTAGAAACCAACACCAAACTGTCCAATCATACTGACATCGGCACCAGCAGCCAAAGCCTCCATGAACTCCTTGA
AAGTATTGATGATAAGGGAGAGAAGCTGATTGATCTCAGCCTGGAAGGCAAACGTCTCTACGTCCGACATCACGATCCCGGAGTTTTTCTTTTAACGATT
GGGAAGTCGAAGAAGCAAAGGAAAATCGACGAAACTTAGGGTTTTTTGTTTTCTCTTTAG