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Detailed information on CNT30103468


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Oryza rufipogonOryza sativa67.588.0391.5353forward
CNT30675843Oryza rufipogonSetaria viridis43.2153.6888.05226forward
CNT30523621Oryza rufipogonSetaria italica44.7435.8388.46234forward
CNT30512942Oryza rufipogonJuglans regia25.6226.4384.33134forward
CNT30729348Oryza rufipogonCorchorus capsularis20.2711.7183.02106forward
CNT3071729Oryza rufipogonQuercus suber38.8172.581.77203forward
CNT30631099Oryza rufipogonVigna unguiculata37.2831.4584.62195forward
CNT30712340Oryza rufipogonGlycine max71.1364.779.84372forward
CNT30158908Oryza rufipogonPistacia vera34.0310.8982.58178forward
CNT30299505Oryza rufipogonTriticum aestivum29.4514.187.66154forward
CNT30566784Oryza rufipogonActinidia chinensis25.0517.2487.79131forward
CNT30554909Oryza rufipogonOryza glaberrima72.4798.4499.47379forward
CNT30145759Oryza rufipogonMedicago truncatula33.0845.6579.77173forward
CNT3061941Oryza rufipogonArabidopsis lyrata18.1636.5484.2195forward
CNT30613762Oryza rufipogonArabis alpina72.8595.2580.58381forward
CNT30652959Oryza rufipogonRosa chinensis26.228.4884.67137forward
CNT30348495Oryza rufipogonEragrostis tef44.7478.5287.18234forward
CNT30366950Oryza rufipogonSorghum bicolor35.3721.6191.35185forward
CNT30154320Oryza rufipogonPrunus persica52.3974.2582.85274forward
CNT30418103Oryza rufipogonPapaver somniferum27.3436.6786.01143forward
CNT3022206Oryza rufipogonPopulus trichocarpa65.7763.2479.94344forward

Expression of CNT30103468

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MDTSAPAASASMNSLVRLGHADTTVDDRQGVASLVGDNVDEQLRLRIELALVREALEPNLIQC

>peptide 2 (42 aa)
MPTPLSMIDRVLLALSGTMWMNSSGCASSLLLSVRLSNLILSN

>peptide 3 (37 aa)
SSSTSSTFPSSASFFSSSSSSSEISFSVVFSVHKEIG*

>peptide 4 (35 aa)
PHQHPQPFPPQHPSSLPRLHHQKSPSRLSSQSIRR*

>peptide 5 (34 aa)
MLLHQILEVEGDLSTPSKLLTRGITCNSEGPTGL*

>peptide 6 (33 aa)
LLINILNLSLLSILLLFLVFIIRNLLLGCLLSP*

Sequence

>CNT30103468
CTCCTCATCAACATCCTCAACCTTTCCCTCCTCAGCATCCTTCTTCTCTTCCTCGTCTTCATCATCAGAAATCTCCTTCTCGGTTGTCTTCTCAGTCCAT
AAGGAGATAGGGTAGCTGATGAACTCAGAATGCTTCTTCACCAGATCCTTGAGGTAGAGGGTGATCTTAGTACCCCGTCCAAGCTGCTCACCAGAGGTAT
CACGTGTAACAGTGAAGGACCCACCGGCCTGTGACTCCCACACATACTGCTCGTCGTCGTTGTGCTTGGTGGTCACAACAACCCTCTCAGCAACGAGGTA
GGCGGAGTAGAACCCGACACCAAACTGCCCAATCATGGACACATCAGCACCAGCAGCGAGCGCCTCCATGAACTCCTTGGTCCGACTTGGTCATGCCGAC
ACCACTGTCGATGATCGACAGGGTGTTGCTAGCCTTGTCGGGGACAATGTGGATGAACAGCTCCGGCTGCGCATCGAGCTTGCTCTTGTCCGTGAGGCTC
TCGAACCTAATCTTATCCAATGC