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Detailed information on CNT30467753


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675831Saccharum spontaneumSetaria viridis61.8887.2985.44474forward
CNT30523531Saccharum spontaneumSetaria italica64.6272.1686.26495forward

Expression of CNT30467753

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQFRALCCSKSVLSKLMLTVPRGDFLLRSIVWDASVVSL*

>peptide 2 (35 aa)
MCLLMERCQPGMVSQFAISRMACLGNLHFNRLSWF*

>peptide 3 (73 aa)
ITPFRVPLPSPPIYTVSRRHPPIPLPYREPAADAAGGDAPRRAREEATMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 4 (44 aa)
MVAVMACLCTYISSDVFANGEMSTWHGVTVRHQSNGLSRKPALQ*

>peptide 5 (48 aa)
SLRLGFRFPPHLYIPSAAAILPFPSPIVNPPPTPQEETRQGEHARRRP*

Sequence

>CNT30467753
GATCACTCCGTTTAGGGTTCCGCTTCCCTCCCCACCTATATATACCGTCAGCCGCCGCCATCCTCCCATTCCCCTCCCCTATCGTGAACCCGCCGCCGAC
GCCGCAGGAGGAGACGCGCCAAGGAGAGCACGCGAGGAGGCGACCATGAGGGCCAAGTGGAAGAAGAAGCGCATGAGGAGGCTGAAGAGGAAGCGCCGAA
AGATGAGGCAGAGATCCAAGTAAGCTGATGGAGATGGATGGTGGCCGTGATGGCATGCTTGTGTACATACATTTCTTCGGATGTGTTTGCTAATGGAGAG
ATGTCAACCTGGCATGGTGTCACAGTTCGCCATCAGTCGAATGGCTTGTCTCGGAAACCTGCACTTCAATAGGCTATCGTGGTTCTAGTTATATCCAGAG
TTTTGCACTAAGACAAATCAGTCTGTCTGTTTTGTGAACCTAATATGATGGAGCTTTATTGCTCCTAATATCTACCTACCTATTAAGTAATTCCTGTGTT
TGTGTTTGTGCTTGGTTGCTCTTTCATTGTGTTATCGTGGTATCTGTGCTGGTTTATCTGGCCTGTTTCTCTTAATTATTAGAGAAACAGTGCTGCTTGT
CATGTTGTCACCCATCTGAAGCTGGGTGATGTAGCATATGCAGTTTCGAGCCTTGTGTTGTTCCAAGAGTGTCCTATCCAAGCTGATGTTAACTGTACCG
CGAGGTGATTTTCTTTTGCGATCGATTGTTTGGGATGCCTCTGTAGTCAGTCTGTAGCTAAGGTCA