Detailed information on CNT30712013


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W3Y4|METK_PHALU, E-value = 3e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673492Glycine maxSetaria viridis83.6738.482.62374forward
CNT30522642Glycine maxSetaria italica64.4318.6580.9288forward
CNT30495282Glycine maxOlea europaea82.3320.982.34368forward
CNT3090332Glycine maxSolanum tuberosum72.9350.1584.36326forward
CNT30181754Glycine maxSecale cereale47.233.5582.94211forward
CNT30294498Glycine maxTriticum aestivum51.6828.9182.68231forward
CNT3086110Glycine maxVigna radiata64.6525.8590.66289forward
CNT3082721Glycine maxBrassica juncea31.3248.4485140forward
CNT30471855Glycine maxSaccharum spontaneum83.6740.6582.09374forward
CNT30212612Glycine maxHelianthus annuus34.6864.3285.81155forward
CNT30368076Glycine maxSorghum bicolor83.6734.3483.16374forward
CNT30355133Glycine maxLactuca sativa35.3518.0683.54158forward
CNT30429132Glycine maxPapaver somniferum83.6723.5880.21374forward
CNT3035650Glycine maxCucumis melo83.6727.7484.49374forward
CNT30101810Glycine maxOryza rufipogon84.3414.8782.49377forward
CNT30174532Glycine maxVigna angularis83.8947.2390.93375forward

Expression of CNT30712013

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MFRRQLCCLGPARGKRRGQHRRFGRRACQGGRVHPEQYQGSAAQC*

>peptide 2 (61 aa)
AQWHQFRGFISGIAKHVTLVTSTNFFRFFGKVAVYTLSNIRALLLNVDEDLAVVGIQSHII*

>peptide 3 (42 aa)
MTKLVLVHVSQATLLSGSCSRQASRTASEIWSQSLSGWPCTP*

>peptide 4 (31 aa)
MLTRTLQLSASSPTSFETKPMFLQVSRTIFS*

>peptide 5 (29 aa)
SMASIQGFHQWHSQTCDPGHQHQFLQVFW*

Sequence

>CNT30712013
GCTCAATGGCATCAATTCAGGGGTTTCATCAGTGGCATAGCCAAACATGTGACCCTGGTCACCAGCACCAATTTCTTCAGGTTTTTTGGTAAGGTGGCCG
TGTACACCCTGAGCAATATCAGGGCTCTGCTGCTCAATGTTGACGAGGACCTTGCAGTTGTCGGCATCCAGTCCCACATCATTTGAGACGAAGCCGATGT
TCCTGCAGGTGTCACGCACTATCTTCTCGTAGTCAACGTTGGCCTTGGTCGTGATTTCTCCGAAGACCATGACCAAGTTGGTTTTGGTGCATGTTTCGCA
GGCAACTTTGCTGTCTGGGTCCTGCTCGAGGCAAGCGTCGAGGACAGCATCGGAGATTTGGTCGCAGAGCTTGTCAGGGTGGCCGTGTACACCCTGAGCA
ATATCAGGGCTCTGCTGCTCAATGTTGACGAGGACCTTGCAGTTGTC