Detailed information on CNT30620685


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499584Cajanus cajanCoffea canephora6.7921.3887.6965reverse complement
CNT30379440Cajanus cajanManihot esculenta14.2143.0483.09136reverse complement
CNT30403856Cajanus cajanBeta vulgaris11.9137.0182.46114forward
CNT30526114Cajanus cajanPhaseolus vulgaris16.5151.9787.34158forward
CNT30708521Cajanus cajanGlycine max31.7710083.88304forward
CNT30587521Cajanus cajanMusa acuminata8.6725.3885.5483forward
CNT3084184Cajanus cajanVigna radiata24.5677.0582.98235forward
CNT30172422Cajanus cajanTrifolium pratense17.4552.8584.43167forward
CNT30653438Cajanus cajanRosa chinensis10.8733.7786.54104forward
CNT30204649Cajanus cajanHelianthus annuus6.7921.4587.6965forward
CNT30625930Cajanus cajanDaucus carota6.2720.079060forward
CNT30478496Cajanus cajanArabidopsis halleri6.0627.191.3858forward
CNT30153271Cajanus cajanPrunus persica6.3720.1390.1661forward
CNT3024632Cajanus cajanPopulus trichocarpa6.921.7890.9166forward
CNT30723384Cajanus cajanLupinus angustifolius6.4820.3993.5562forward

Expression of CNT30620685

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MKSSIFPCSWGSGFSVLLVVQVDNITSLQHFMFHLMEGTSPTSTNFLYKSSFIRI*

>peptide 2 (30 aa)
MYCRFFIYFNASSIRLHVKVDQDFKNINKSR

Sequence

>CNT30620685
ATTGGATGGACGCAAACTTCATATATCAGTTGCTTCAGTGCAAGTCTGATATGAGTATGACAAAACCTTGAAATTGAAACGCACGCAACTTCACTTGTCA
TTAGTACCCAATTATTGCTTTCAAGCCTATGTCTAAATTCTAACAATGGATATCACCTGCTTATAACTTAACTACATAAGTCTAACTCTATTTGGGTTAT
CAATCAATCCATGAAATCTTCCATTTTTCCTTGTAGTTGGGGTTCTGGATTTTCTGTTTTACTAGTTGTCCAGGTAGATAACATTACAAGTTTACAACAT
TTTATGTTCCACCTCATGGAAGGAACAAGTCCCACATCGACCAATTTCTTATACAAGTCATCCTTTATAAGAATCTGACAAGGATGTCCGTTCGCCGAGC
TTGATAACTCTAGCTTGTAACCCGAGTGGGGGCACCAAGGTGATGGAACATGGCTCGTTCTACGCTCGGTTGGTCTGGAAGATGCATTATGCAGGCCTGC
CCGCTCCAAGTTAGGAGTTGAGCAATGGGACTTGGGCGAAGGCTTGGGTTTCCTTGTTCCTAAAGCGGAGCTCACAGCGTGAGGCTGGCTTCACAGAGCA
GCGACCACCTTCCTCTCCTCACAGTGGAAGGATAACAGGCTGCTGCTCTTCTAGTCCACCATAACCGGGTGTGCCAAGCTCATGAACCATCATTTTTTAT
TATTATTTTTTTTTTAAATTTCGTGTTAGCCAGAAATTTCCCTTACATCAATTTCCCCACTTTTACTTGGCAAAATATACAAGCTCGTTATATTGTTGAT
CTTCATCAAGATTGAAAGGAATATATAATTGAACTATGTGCGTAAAGCGTAATATTGTTCTCAATGTATTGTAGATTTTTCATCTACTTTAATGCTTCAT
CCATTAGGCTTCATGTTAAAGTAGATCAAGATTTTAAAAACATAAATAAATCAAGAT