Detailed information on CNT3093739


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315642Solanum tuberosumCorylus avellana23.0314.5288.5770forward
CNT30518096Solanum tuberosumJuglans regia23.6820.8787.572reverse complement
CNT30501219Solanum tuberosumCoffea canephora29.2828.0887.6489reverse complement
CNT30506772Solanum tuberosumNicotiana attenuata100.3310089.84305forward
CNT30711674Solanum tuberosumGlycine max252586.8476forward
CNT30509595Solanum tuberosumSolanum lycopersicum99.6710094.39303forward
CNT30653670Solanum tuberosumRosa chinensis24.0117.7689.0473forward
CNT30644675Solanum tuberosumCannabis sativa27.9621.4188.2485reverse complement
CNT3024632Solanum tuberosumPopulus trichocarpa30.5930.6984.9593forward
CNT3050759Solanum tuberosumCucumis sativus20.3920.2687.162forward

Expression of CNT3093739

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MWWNVGLFLMAGLWWANVWSALSKHGVEPRGPNESLGCLAPRVGWNA*

>peptide 2 (64 aa)
MSGLPYPSTELSHVAQTKVWAAWLLEWGGMREAGFTEQRTVPAPCSGRITGQCSPSSIKTKWAI*

>peptide 3 (30 aa)
PSLVTWACNSSGGNNVVECWVVPDGWALVG*

Sequence

>CNT3093739
GCCGAGCCTTGTAACGTGGGCTTGTAACTCGAGTGGGGGCAACAATGTGGTGGAATGTTGGGTTGTTCCTGATGGCTGGGCTTTGGTGGGCTAATGTCTG
GTCTGCCCTATCCAAGCACGGAGTTGAGCCACGTGGCCCAAACGAAAGTTTGGGCTGCTTGGCTCCTAGAGTGGGGTGGAATGCGTGAGGCTGGTTTCAC
AGAGCAACGAACAGTCCCCGCTCCGTGCAGTGGAAGGATAACGGGTCAGTGCTCTCCAAGTTCAATAAAAACCAAATGGGCTATCTAATTAGACCACCAC
TTTT