Detailed information on CNT30547369


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382680Ipomoea trilobaManihot esculenta9.6923.7688.8972forward
CNT30711674Ipomoea trilobaGlycine max10.232589.4776forward
CNT30566738Ipomoea trilobaActinidia chinensis10.7722.2891.2580forward
CNT30591720Ipomoea trilobaMusa acuminata10.7725.0888.7580forward
CNT30235645Ipomoea trilobaBrassica oleracea9.8323.7887.6773forward
CNT30509042Ipomoea trilobaSolanum lycopersicum11.0426.885.3782forward
CNT30172978Ipomoea trilobaTrifolium pratense9.9624.1889.1974forward
CNT30313675Ipomoea trilobaCamelina sativa9.8324.6686.373reverse complement
CNT30261535Ipomoea trilobaBrassica rapa9.4223.039070forward
CNT30213128Ipomoea trilobaHelianthus annuus9.4222.887.1470forward
CNT30714905Ipomoea trilobaMalus domestica golden9.0222.1991.0467forward
CNT30644781Ipomoea trilobaCannabis sativa11.0435.1992.6882reverse complement
CNT3053206Ipomoea trilobaAmborella trichopoda8.6120.9290.6264forward
CNT3024632Ipomoea trilobaPopulus trichocarpa10.2325.0888.1676forward
CNT30174907Ipomoea trilobaVigna angularis10.2324.9286.8476forward
CNT30724469Ipomoea trilobaLupinus angustifolius8.6120.9887.564forward

Expression of CNT30547369

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRQAGFTEQRKPPPLCSGRITGRCNPCPLA

>peptide 2 (31 aa)
VHRVPLDHKAFGTDTTLNIIKTLIKNNFTQC*

>peptide 3 (50 aa)
MLIKSNTSETKKVLRIKLALEKVILFPIFLIKLTTPTLPFLCLDSRLKKN*

Sequence

>CNT30547369
TGTACATCGGGTGCCGCTTGACCACAAGGCCTTTGGCACTGATACTACACTTAATATTATAAAAACTTTAATTAAAAATAACTTCACTCAATGTTAATTA
AATCAAACACATCAGAGACGAAAAAAGTACTCCGTATAAAATTAGCCCTTGAAAAAGTTATATTATTCCCTATCTTCCTCATTAAACTCACCACACCCAC
CCTGCCCTTCCTTTGTCTTGATTCTAGGTTGAAGAAGAACTAGGCGGGTTTGAGAGAAGATATATATATATATATATATATATATATATATATATATATA
TATATATATGGGGTTTCTCCTGTTCTTGGCAGGCAGTTTCTGCGGTGCTGATGAAGATCGATCGAGAACGGAGAACCATCGGCATAGAGGGTAAGCAGTG
AACCAATTTCCCACATCGAATTCATACCACAAGTATTTTTTCTTAATAAGCTCCTAGCTGGGTTGTTCATTCGCTGGGCTTGGTAACGCTAGCCTGTAAC
CCGAGTGGGAGCATTAAGATGGTGGAACAATTGGGCTTTTCGTGAGGGTTGGGCTTGGTTGCTACTTACTGGTCTGCCCGTTCCAAGTGGTGAGTGCGCC
GTGGAGTCTCCGCTAAAGTGGAGGCGTCTCGACCCTTAGATTGTGGAGGGCAATGCGTCAGGCTGGCTTCACAGAGCAGCGAAAACCTCCTCCTCTCTGC
AGTGGAAGGATAACAGGCCGGTGCAATCCTTGTCCACTAGCGC