Detailed information on CNT30381728


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Manihot esculentaCorylus avellana20.1317.5196.7762reverse complement
CNT30501219Manihot esculentaCoffea canephora22.0821.4588.2468reverse complement
CNT30727389Manihot esculentaCorchorus capsularis19.4826.7991.6760forward
CNT3070907Manihot esculentaQuercus suber2524.0690.9177reverse complement
CNT30525537Manihot esculentaPhaseolus vulgaris22.422.6289.8669forward
CNT3086859Manihot esculentaVigna radiata22.422.8589.8669forward
CNT30172987Manihot esculentaTrifolium pratense23.0523.6791.5571forward
CNT30261746Manihot esculentaBrassica rapa20.4526.8188.8963forward
CNT30612154Manihot esculentaArabis alpina20.4520.7290.4863reverse complement
CNT30652801Manihot esculentaRosa chinensis2525.1694.8177forward
CNT30623923Manihot esculentaDaucus carota19.8120.0788.5261forward
CNT3029804Manihot esculentaTheobroma cacao22.0822.1591.1868forward
CNT3024632Manihot esculentaPopulus trichocarpa20.1320.4696.7762forward
CNT30723394Manihot esculentaLupinus angustifolius20.4520.8688.8963forward

Expression of CNT30381728

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MELKRRLGVAYFLEQRVLREAGFTEQRLPLAPGSGRITSRCHPSPYDQMGFANPDRHL

>peptide 2 (42 aa)
PSPVAWAYDLSGGFEVMERCACSEGWARCWQILWLAPFQARS*

>peptide 3 (35 aa)
MLANIMACPIPSPELNHGAQAKAWGCIFPRAKGTA*

Sequence

>CNT30381728
GCCGAGCCCAGTAGCGTGGGCCTATGACCTAAGCGGGGGCTTTGAGGTGATGGAACGTTGCGCTTGTTCGGAAGGTTGGGCCCGATGTTGGCAAATATTA
TGGCTTGCCCCATTCCAAGCCCGGAGTTGAATCATGGAGCTCAAGCGAAGGCTTGGGGTTGCATATTTCCTAGAGCAAAGGGTACTGCGTGAGGCTGGTT
TCACAGAGCAGCGACTACCTCTCGCTCCTGGCAGTGGAAGGATAACAAGTCGGTGTCACCCGAGCCCATATGACCAGATGGGCTTCGCTAACCCGGACCG
TCACCTTT