Detailed information on CNT30366979


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Sorghum bicolorSetaria viridis24.3953.0291.28149forward
CNT30535924Sorghum bicolorEucalyptus grandis11.1323.2189.7168forward
CNT30234716Sorghum bicolorBrassica oleracea19.4843.9183.19119forward
CNT30171519Sorghum bicolorTrifolium pratense24.8844.7182.24152forward
CNT30205421Sorghum bicolorHelianthus annuus19.9722.8982.79122forward
CNT30625815Sorghum bicolorDaucus carota17.5126.8285.98107forward
CNT30596739Sorghum bicolorOryza meridionalis55.6552.3181.47340forward
CNT30330867Sorghum bicolorDioscorea rotundata24.3920.6180.54149forward
CNT30577473Sorghum bicolorOryza barthii52.3758.7281.56320forward

Expression of CNT30366979

Peptides detected in this lncRNA

>peptide 1 (32 aa)
EKSDYMESSGGCLESMHAKGCTWLMKDCSSEK*

Sequence

>CNT30366979
GGAGAAGTCTGACTATATGGAGTCATCCGGGGGCTGCTTGGAGAGTATGCATGCGAAGGGCTGTACTTGGCTGATGAAGGATTGTAGCTCGGAGAAGTAG
GACTGTAGCTCGGAGAAGTAGGACTGTAGCTCGGTGATGTTGGGCTGTATCCTGGCGAAGTAGGGCTGTATGCAGGTGATGTTGGGCTGTACGAGGGGGA
GGTAGGGCTGTATGAGGGGGAGGTAGGGCTGTATGAGGGGGATGTTGGGCTGTATGATGGTGATGTAGGGCTATAAGATGGCGAAGTTGGACTGTAAGAT
GGTGATGTGGGGCTATATGCGGGAGATGTAGGGCTGTATGCTGGAGATGTAGGGCTATAAACTGGAGATGTTGGGCTGTAACTCGGAGATGTGGGTGAGT
ATGATGGACTGGTAGGCGAGTAAGTCGGACTTGTTGGGGAGTAATTCGGGCTTGTGGGACTGTAGGTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGG
ACTATAGCTTGGCGATGCAGGGCTGTATGATGGAGAAAGAGGGCTATATCCTTTCTCTGGGGTGAAAACAGGAGAAGATGGACTGTATCCCCCTGACGAT
GGAGAGTAACC