« Back to Populus trichocarpa search


Detailed information on CNT3023412


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 1e-10

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Populus trichocarpaNymphaea colorata28.6721.479.63162forward
CNT30500604Populus trichocarpaCoffea canephora21.5919.8482.79122forward
CNT3021339Populus trichocarpaCitrullus lanatus32.3928.8681.42183forward
CNT30379142Populus trichocarpaManihot esculenta25.6615.5286.21145forward
CNT30489068Populus trichocarpaOlea europaea18.4121.0585.58104forward
CNT30710529Populus trichocarpaGlycine max26.7326.7780.79151forward
CNT3042412Populus trichocarpaPrunus dulcis25.8419.786.3146forward
CNT30591824Populus trichocarpaMusa acuminata24.2534.6882.48137forward
CNT30508941Populus trichocarpaSolanum lycopersicum18.4126.283.65104forward
CNT30171519Populus trichocarpaTrifolium pratense18.2330.2983.5103forward
CNT30312432Populus trichocarpaCamelina sativa28.3241.1384.38160forward
CNT30263845Populus trichocarpaBrassica rapa43.367079.59245forward
CNT30648253Populus trichocarpaRosa chinensis29.0324.5981.71164forward
CNT30713436Populus trichocarpaMalus domestica golden19.2933.8587.16109forward
CNT30476914Populus trichocarpaArabidopsis halleri28.6728.9383.33162forward
CNT30154791Populus trichocarpaPrunus persica25.8418.7985.62146forward
CNT30574226Populus trichocarpaVitis vinifera18.2320.6485.44103forward
CNT30705859Populus trichocarpaPrunus avium45.4934.482.49257forward
CNT30121063Populus trichocarpaCitrus clementina22.6526.7288.28128forward
CNT30330871Populus trichocarpaDioscorea rotundata21.0616.4682.35119forward
CNT30558075Populus trichocarpaPanicum hallii21.2415.2184.17120forward

Expression of CNT3023412

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MLDCTQVKWDCTQVKWGCNWGMWGCSWGMWGCSSGKWGCSWGKWGCSSGKWGCSLVKWGSMMDL*

>peptide 2 (45 aa)
MPVMGCILLIGGCNLARLGCSQGRLGYRLVKWGCRMGMWGCMMGR*

Sequence

>CNT3023412
CTATAATTTGGAGATGTTGGACTGTAAGGACTGGCTGGTGACAATCTTGGACTGCTAGGTGAGTATGCCAGTGATGGGCTGTATTTTGCTGATTGGGGGT
TGTAACTTGGCGAGGTTGGGCTGTAGCCAGGGGAGGTTGGGCTATAGGCTGGTGAAGTGGGGCTGTAGGATGGGGATGTGGGGCTGTATGATGGGGAGGT
AGGGCTGTACGCAGGTGATGTTGGACTGTACGCAGGTGAAGTGGGACTGTACGCAGGTGAAGTGGGGCTGTAACTGGGGGATGTGGGGCTGTAGCTGGGG
GATGTGGGGCTGTAGCTCGGGGAAGTGGGGCTGTAGCTGGGGGAAGTGGGGCTGTAGCTCGGGGAAGTGGGGCTGTAGCTTGGTGAAGTGGGGGAGTATG
ATGGACTTGTAGGAGAATAGGCAGGACTAGTTGGGCTATAACTAGGAGAACTGGGACTATAAGTGGGTGAGGTTGGGCTATAACTTGGGGAAGCAGGGCT
ATAACTTGGTGAGGCGGGGCTGTATGAAGGTGAAGTAGGACTGTATCCAGGACTGTAGACTGGAG