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Detailed information on CNT30536042


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 3e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675703Eucalyptus grandisSetaria viridis44.5587.1981.22245forward
CNT30640872Eucalyptus grandisNymphaea colorata82.1859.7179.65452forward
CNT30549216Eucalyptus grandisIpomoea triloba41.8240.4284.35230forward
CNT30516897Eucalyptus grandisJuglans regia94.9159.0581.8522forward
CNT30376379Eucalyptus grandisArabidopsis thaliana87.0964.3882.67479forward
CNT30500730Eucalyptus grandisCoffea canephora77.8249.5480.14428forward
CNT30616515Eucalyptus grandisSesamum indicum75.6461.7279.81416forward
CNT30267761Eucalyptus grandisChenopodium quinoa85.4557.678.94470forward
CNT30403782Eucalyptus grandisBeta vulgaris71.0993.5478.52391forward
CNT30489068Eucalyptus grandisOlea europaea57.8264.3779.56318forward
CNT30710529Eucalyptus grandisGlycine max64.7363.1279.78356forward
CNT3042412Eucalyptus grandisPrunus dulcis9872.7483.12539forward
CNT30235097Eucalyptus grandisBrassica oleracea99.8268.5479.42549forward
CNT30508722Eucalyptus grandisSolanum lycopersicum35.4538.0183.08195forward
CNT30171519Eucalyptus grandisTrifolium pratense40.5565.5981.17223forward
CNT3076593Eucalyptus grandisBrassica juncea64.7365.279.78356forward
CNT30263459Eucalyptus grandisBrassica rapa87.6489.0980.91482forward
CNT30216752Eucalyptus grandisKalanchoe fedtschenkoi31.6437.5882.76174forward
CNT3067979Eucalyptus grandisLeersia perrieri29.2744.7283.85161forward
CNT30476914Eucalyptus grandisArabidopsis halleri78.9177.582.72434forward
CNT30366570Eucalyptus grandisSorghum bicolor49.8244.7781.75274forward
CNT30154712Eucalyptus grandisPrunus persica9869.1983.49539forward
CNT30705862Eucalyptus grandisPrunus avium99.0951.3281.1545forward
CNT3028162Eucalyptus grandisTheobroma cacao87.4585.7481.5481forward
CNT30109704Eucalyptus grandisOryza longistaminata29.2728.9685.09161forward
CNT30114394Eucalyptus grandisFicus carica50.7346.8979.57279forward
CNT3049544Eucalyptus grandisCucumis sativus63.6443.782.29350forward

Expression of CNT30536042

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLGCNQEMWGYKLVKLGCRKEMWGCKKVKLGCRMERSGYKMVMWGYKQERLDYN*

>peptide 2 (36 aa)
LEMWDCKDWTVTILDCLVSTPMMGCILPTEGCNSEK*

>peptide 3 (30 aa)
MQDLLGYNQENLDCRLEMWGCSQEMWGCSQV

Sequence

>CNT30536042
GTTTGGAGATGTGGGACTGTAAGGACTGGACGGTGACAATCTTGGACTGCTTGGTGAGTACGCCAATGATGGGCTGTATTTTGCCGACTGAGGGTTGTAA
CTCGGAGAAGTAGGGCTGTAGCTCGGTGAAGTTGGGCTGTAACTTGGTGATGTTGGGCTGTAACCAGGAGATGTGGGGCTATAAGCTGGTGAAGTTGGGC
TGTAGGAAGGAGATGTGGGGCTGTAAGAAGGTGAAGTTGGGCTGTAGGATGGAGAGGTCGGGCTATAAGATGGTGATGTGGGGCTATAAACAGGAGAGGT
TGGACTATAACTAGGTGATGTAGGGCTGTAACTGGGCGAAGTGGGGCTGTAGCTGGGAGATGTAGGGCTATAAGATGGAGAAGTAGGGCTATAAGATGGG
GAAGTGGGGCTATAGCTGGGAGAAGTGGGTGAATACGAAGGGCTTGTAGGTGAATATGCAGGACTTGTTGGGCTATAACCAGGAGAACTTGGACTGTAGG
TTGGAGATGTGGGGCTGTAGCCAGGAGATGTGGGGCTGTAGCCAGGTGAT