CANTATAdb - search

Detailed information on CNT30625385

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30378908	Daucus carota	Manihot esculenta	41.61	44.39	79	419	forward
CNT30559586	Daucus carota	Actinidia chinensis	28	34.94	85.46	282	forward
CNT30171519	Daucus carota	Trifolium pratense	17.78	52.65	83.24	179	forward
CNT30606053	Daucus carota	Gossypium raimondii	35.75	59.6	79.17	360	forward
CNT30354661	Daucus carota	Lactuca sativa	34.96	63.31	82.39	352	forward
CNT30705862	Daucus carota	Prunus avium	38.93	36.91	80.87	392	forward
CNT30330867	Daucus carota	Dioscorea rotundata	50.55	70.4	78.98	509	forward
CNT30114394	Daucus carota	Ficus carica	25.32	42.86	80.39	255	forward

Expression of CNT30625385

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLVSWGYNQVKQGYTQERRGCTQERQGCTQERRGCTQVKRGYNLEKMQEKIPCHQHREKIVHQ*

>peptide 2 (37 aa)
MIWGARDWRPGWSHAKVQTVHVTRKLNVNSLFQHLLI*

>peptide 3 (67 aa)
MMEKLDCMKVRLGCMMGRLGCRTGSSGCRTERSGCRMERWGCRTERWGCKQVRWGCRQVRWGCSWGR*

>peptide 4 (34 aa)
MSDCTGWMVIVLDCSGNMPGRGCTLQMKGCSLEM*

Sequence

>CNT30625385
AATTCATCACATAGAACACTTCTAAACAGGAAAATTAAACATTCGGGAAATAAAAGTGTCATCTCTTGCCTGTAACTGGGGGATGTCGGACTGTACGGGC
TGGATGGTGATAGTCTTGGACTGCTCGGGGAATATGCCAGGGAGGGGCTGTACTTTGCAGATGAAGGGTTGTAGCTTGGAGATGTAGGACTATAGCTTGG
AGATGTGGGACTGTAGCTCGGCGATGTGGGACTGTATGCAGGAGAAGTAGGACTATATGATGGAGAAGTTGGACTGTATGAAGGTGAGGTTGGGCTGTAT
GATGGGGAGGTTGGGCTGTAGGACGGGGAGCTCGGGCTGTAGGACGGAGAGGTCGGGCTGTAGGATGGAGAGGTGGGGCTGTAGGACGGAGAGGTGGGGC
TGTAAGCAGGTGAGGTGGGGCTGTAGGCAGGTGAGGTGGGGCTGTAGCTGGGGGAGGTAGGGGAGTAGGATGGACTTGTCGGTGAATATGTAGGGCTACT
AGGACTATATCCTGGAGAGCTTGGACTATATGTTGGTGAGCTGGGGCTATAACCAGGTGAAGCAGGGCTATACCCAGGAGAGGCGGGGCTGTACCCAGGA
GAGGCAGGGCTGTACCCAGGAGAGGAGGGGCTGTACCCAGGTGAAGAGGGGCTATAACTTGGAGAAGATGCAGGAGAAAATCCCATGCCACCAACATAGG
GAGAAAATTGTGCATCAGTAATGGGTGACAGCCGAAGGTTTGGGCTTAGCATGTAGTTTGGTGACATCATTCCATCATGATATGGGGTGCCCGAGATTGG
CGACCGGGCTGGAGTCATGCCAAAGTCCAGACCGTCCATGTAACTAGGAAGCTGAATGTCAATAGCTTGTTTCAACATCTTCTCATTTAAATACAAAGAA
CAGTCTCCAGTGCCAATTGGTGCCAGTTGACCCAACATGATATTTTCAGTAACACCTCTCAGGTAATCTGTTTCTGCATAAACTGCAGCATCAAGGAGAA
TGTCAAC