Detailed information on CNT3093840


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678562Solanum tuberosumSetaria viridis23.8637.0394.56147forward
CNT30521002Solanum tuberosumSetaria italica34.7447.4586.92214reverse complement
CNT30548989Solanum tuberosumIpomoea triloba80.363693.13495reverse complement
CNT30378671Solanum tuberosumArabidopsis thaliana23.2150.7196.5143forward
CNT30632593Solanum tuberosumVigna unguiculata54.2219.7993.11334reverse complement
CNT30298950Solanum tuberosumTriticum aestivum29.0612.3996.65179forward
CNT30220645Solanum tuberosumHordeum vulgare43.8359.7392.96270forward
CNT30400759Solanum tuberosumTriticum turgidum28.915.1196.63178reverse complement
CNT30569652Solanum tuberosumActinidia chinensis45.6247.1596.44281forward
CNT30554921Solanum tuberosumOryza glaberrima21.7537.9697.01134reverse complement
CNT30147394Solanum tuberosumMedicago truncatula35.2310.8997.7217reverse complement
CNT30440683Solanum tuberosumAegilops tauschii29.0618.5396.65179reverse complement
CNT30247816Solanum tuberosumAvena sativa38.3111.392.37236reverse complement
CNT30203595Solanum tuberosumHelianthus annuus79.8726.8693.5492reverse complement
CNT30480888Solanum tuberosumArabidopsis halleri21.2714.6784.73131reverse complement
CNT30366518Solanum tuberosumSorghum bicolor12.1823.1590.6775forward
CNT30318721Solanum tuberosumAsparagus officinalis8.7721.7788.8954reverse complement
CNT30148178Solanum tuberosumBrachypodium distachyon20.6258.897.64127forward
CNT30104648Solanum tuberosumOryza rufipogon29.0630.795.53179forward
CNT30495774Solanum tuberosumDigitaria exilis23.3836.3697.22144forward

Expression of CNT3093840

Peptides detected in this lncRNA

>peptide 1 (34 aa)
GPLRTTPPGGSPECRVFLCRQLDVVVTCKIRPKT*

>peptide 2 (29 aa)
GHYVPHHRVARLNAESFSAVNSTSSSPAR*

>peptide 3 (35 aa)
MPSLSLPSTRRRRHLQDKAKNLTLLNKRERPFLSY*

>peptide 4 (29 aa)
MKVSTIPLRTGFLVHMSRAGKVLRASDRE*

Sequence

>CNT3093840
GGGGCCACTACGTACCACACCACCGGGTGGCTCGCCTGAATGCCGAGTCTTTCTCTGCCGTCAACTCGACGTCGTCGTCACCTGCAAGATAAGGCCAAAA
ACTTGACTTTACTAAACAAGCGAGAAAGGCCCTTTCTATCTTATTAGTCAAGCGCGCTAGCTGCAATCAAAAAACAGCGCTAACTAGAAATAGAAAGTGC
TTCGAAAGGCGCCGGCTACCTTCTTACTGACAGCACAGCTAGGTGCTGGCACTCAATTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCTCACTTCGGT
TCCAAAGACTTTCTCCTTAGGCGCATGTCTCAGCAACACAAAATGAGGGTTTCACTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGAC
AGCCATGCAACACCTGTATGAAAGTAAGTACCATCCCGTTAAGGACAGGTTTTCTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGTGCTTCGGATCG
GGAGTAACCACTAGTGATAGGGCAAAAATAGGGGGGAAGGACAAAGGAAAGAGCGATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAATAA
CGGCGCACGAACCGTA