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Detailed information on CNT30548989


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521002Ipomoea trilobaSetaria italica15.5647.4588.32214forward
CNT3093840Ipomoea trilobaSolanum tuberosum3680.3693.13495reverse complement
CNT30220487Ipomoea trilobaHordeum vulgare28.5173.1391.33392reverse complement
CNT30554921Ipomoea trilobaOryza glaberrima10.0439.0997.83138forward
CNT30460491Ipomoea trilobaSaccharum spontaneum3.5624.2693.8849forward
CNT30366518Ipomoea trilobaSorghum bicolor10.2543.5281.56141reverse complement

Expression of CNT30548989

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIG

>peptide 2 (94 aa)
MWFNSIQRAKPYQPLTYEQENLSLTGWYLLSYRCCMAVVSSCREMFGQVXQRAKPYQPLTYEQENLSLTGWYLLSYRCCMAVVSSCREMFGQVL*

>peptide 3 (47 aa)
MTSSPHGPYGLGHTRATMAITMGSKAVRRSESGKIASVRIVLCNSGT*

Sequence

>CNT30548989
GACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACA
GAGGAGAGTGGAATTTCGTGTGTTAGGGGGGTGAAATCCTGAGATCCACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGAG
GTGCGAAAGCATGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCCCAGCT
AACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCG
ATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAAGAAAACCTGTCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCATGGCTGTCG
TCAGCTCGTGTCGTGAGATGTTTGGTCAAGTGACNCAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAAGAAAACCTGTCCTTAACGGGATGGTA
CTTACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAG
ACATGCGCCTAAGGAGAAAGTCTTTGCAACCGAAGTGAGCCGAGGAGCCGAGTGACGTGCCAGCGCTACTAATTGAGTGCCAGCACCTAGCTGTGCTGTC
AGTAAGAAGGTAGCCGGCGCCTTTCGAAGCACTTTCTAGTTAGCGCTTTAGTTTGATTGCAGCTAGCGCGCTTGACTAAAGAAAGGGCTTCATTTACTGC
TTTGTTTCTTGTTTAGTAAAGTCAAGTTTTTGGCCTTATCTTGCAGGTGACGACGACGTCGAGTTGACGGCAGAGAAAGACTCGGCATTCAGGCGAGCCG
CCCGGTGGTGTGGTACGTAGTGGGTTTAGTACGCCCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACTAAGGACTGCCAGTGAT
ATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTA
AGGCGGAGCGAATCTGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGC
GGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACT