Detailed information on CNT30521002


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672456Setaria italicaSetaria viridis75.6177.3299.71341reverse complement
CNT30548989Setaria italicaIpomoea triloba47.4515.5688.32214forward
CNT30378671Setaria italicaArabidopsis thaliana18.8530.1498.8285reverse complement
CNT30637323Setaria italicaCapsicum annuum26.838.5793.39121forward
CNT3093840Setaria italicaSolanum tuberosum47.4534.7486.92214reverse complement
CNT30220487Setaria italicaHordeum vulgare75.3963.4394.71340reverse complement
CNT30400759Setaria italicaTriticum turgidum73.6128.1894.58332forward
CNT30569653Setaria italicaActinidia chinensis26.8318.0398.35121reverse complement
CNT30554921Setaria italicaOryza glaberrima17.7422.6610080forward
CNT30435015Setaria italicaAegilops tauschii73.6129.4693.07332reverse complement
CNT3081478Setaria italicaBrassica juncea26.8310.4595.87121forward
CNT3017904Setaria italicaZea mays74.7220.4795.25337reverse complement
CNT30366518Setaria italicaSorghum bicolor58.5481.4897.35264reverse complement
CNT30420891Setaria italicaPapaver somniferum24.834.1798.21112reverse complement
CNT30318721Setaria italicaAsparagus officinalis16.6330.2486.6775forward
CNT30151602Setaria italicaBrachypodium distachyon20.6218.5610093reverse complement
CNT30104648Setaria italicaOryza rufipogon25.519.7399.13115reverse complement
CNT30581589Setaria italicaEchinochloa crusgalli74.7234.5397.92337reverse complement
CNT30495774Setaria italicaDigitaria exilis19.0721.7210086reverse complement

Expression of CNT30521002

Peptides detected in this lncRNA

>peptide 1 (46 aa)
HKSQDNTDFHTGAAWLSSARVVRCLVKSYNERNPRFVLLRHAPKEK*

Sequence

>CNT30521002
CATAAATCTCAGGATAATACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACC
CTCGTTTTGTGTTGCTGCGACATGCGCCTAAGGAGAAATAGCCGAGGAGAGGAGCCGAGTGACGTGCCAGCGCTACTACTTGATTGAGTGCCAGCACGTA
GCTGTGCTTTCAGCAAGAATTTCACCATTGGGAGCCGGTGCCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCGAACTCAAGACCCACGGA
GACCTACCTATAGTGACGTCAAAGTACCAGTGAGCATGGAGGTTTGGTTAGGCTAAGGATCTATCTATAGAAAGATCTAGATCTCTATCATCATCTATCT
CTATATCTAAATACTATAGAAATCGAAGCCTGTCCCCGACGACGATGCCCC