« Back to Helianthus annuus search


Detailed information on CNT30203595


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Helianthus annuusOryza sativa54.7532.0196.911003reverse complement
CNT30678576Helianthus annuusSetaria viridis19.0568.9795.99349reverse complement
CNT30524653Helianthus annuusSetaria italica17.5826.8898.45322forward
CNT30550263Helianthus annuusIpomoea triloba100.6615.9894.91844forward
CNT30632593Helianthus annuusVigna unguiculata71.5177.6195.951310forward
CNT30504983Helianthus annuusNicotiana attenuata32.1532.3497.28589forward
CNT3093840Helianthus annuusSolanum tuberosum26.8679.8793.5492reverse complement
CNT30304298Helianthus annuusTriticum aestivum54.7537.9196.411003reverse complement
CNT30400948Helianthus annuusTriticum turgidum54.7540.1296.611003reverse complement
CNT30569652Helianthus annuusActinidia chinensis17.353.1995.9317reverse complement
CNT30585815Helianthus annuusMusa acuminata54.5341.1693.49999forward
CNT30234810Helianthus annuusBrassica oleracea40.7298.5592.23746reverse complement
CNT30554921Helianthus annuusOryza glaberrima7.5339.0997.1138forward
CNT30147394Helianthus annuusMedicago truncatula64.2559.0995.921177forward
CNT30662061Helianthus annuusTriticum dicoccoides54.7552.2796.811003reverse complement
CNT3081478Helianthus annuusBrassica juncea40.8864.6892.66749forward
CNT30143344Helianthus annuusLolium perenne59.7748.9595.981095reverse complement
CNT3016633Helianthus annuusZea mays59.9957.5193.811099reverse complement
CNT30218527Helianthus annuusKalanchoe fedtschenkoi52.5764.6796.16963reverse complement
CNT3067373Helianthus annuusLeersia perrieri15.2892.7297.86280forward
CNT30655385Helianthus annuusRosa chinensis60.5347.0996.121109forward
CNT30689128Helianthus annuusTriticum urartu54.7553.9596.011003forward
CNT30721611Helianthus annuusTriticum spelta12.2348.5996.88224reverse complement
CNT30595506Helianthus annuusOryza meridionalis18.7231.1898.25343reverse complement
CNT30369805Helianthus annuusOryza glumipatula52.9567.6495.15970forward
CNT30154718Helianthus annuusPrunus persica29.878.7995.24546forward
CNT30420891Helianthus annuusPapaver somniferum32.2121.9791.36590reverse complement
CNT30323793Helianthus annuusAsparagus officinalis9.2253.4895.86169forward
CNT30151602Helianthus annuusBrachypodium distachyon15.2355.6989.96279reverse complement
CNT30104648Helianthus annuusOryza rufipogon25.3879.7697.2465reverse complement
CNT30575706Helianthus annuusOryza barthii52.9539.894.95970forward
CNT30582488Helianthus annuusEchinochloa crusgalli54.7582.6297.011003forward
CNT30495774Helianthus annuusDigitaria exilis21.4599.2498.47393reverse complement
CNT30116696Helianthus annuusOryza nivara54.7525.397.011003reverse complement
CNT3040451Helianthus annuusMarchantia polymorpha9.8830.8392.82181forward

Expression of CNT30203595

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWVKAQSSNIA*

>peptide 2 (36 aa)
MRLRRKSLQPKSAEEPSDVPALLIECQHVAVLSVRW*

>peptide 3 (47 aa)
MTSSLHGLYGLGHTRATMAITMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 4 (44 aa)
MTRLEEEAPANFVPAAAVRRGGGGGGQVFFGMTRRKGHVGGESG*

>peptide 5 (33 aa)
RRLRSSTPGSPGSTTVGPNHSQKKSLILAQKER*

>peptide 6 (31 aa)
MQVKRCFRGAGQKEKRLLAKGSLSRPGGEKS*

>peptide 7 (63 aa)
MLSKPIHLSETEESGISCVGVKSVNIRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCRKR*

>peptide 8 (50 aa)
MWFNSTQHAKPYQPLTYEQENLSLTGWYLLSYRCCMAVVCSCREMFGQVL*

Sequence

>CNT30203595
AGAAGGTTGAGAAGTAGTACGCCCGGTTCACCAGGTTCTACCACTGTAGGGCCAAATCATAGTCAAAAGAAGAGTTTGATCCTGGCTCAGAAGGAACGCT
AGCTATATGCTTAACACATGCAAGTCAAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGGTAGCTTGTCTCGCCCAGGAGG
TGAGAAGAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTAAAAAGCGCTGTTT
GATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAG
ACACGGCCCGGACTCCCGCGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGTGAAAGCCCAATCCAGCAATATTGCGTGAGTGAAGAAGGGCAATGCCG
CTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGGGG
GGGGGGGGGCAAGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCTAAAAAGTGGCGGAATGCTCT
CGAAACCAATTCACTTGAGTGAGACAGAAGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAAATATACGAAGGAACGCCAAAAGCGAAGGCAGCTC
TCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGT
CTACGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCTGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGC
GGTGGAGCATGTGGTTTAATTCGACACAACACGCAAAACCTTACCAGCCCTTGACATATGAACAAGAAAACCTGTCCTTAACGGGATGGTACTTACTTTC
ATACAGGTGCTGCATGGCTGTCGTCTGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCC
TAAGGAGAAAGTCTTTGCAGCCGAAGTCAGCAGAGGAGCCGAGTGACGTGCCAGCGCTACTAATTGAGTGCCAGCACGTAGCTGTGCTGTCAGTAAGATG
GTAGCCGGCGCCTTTCGAAGCCTAAGCCCTTTCTTTTCTAGCGTGCGCTTTAGTTTGATTGTAGCTAGCGCGCTTGACTAAGAAGATAGAAAGGGTTTTT
CTCGCTTGGTTAGTAAAGTCAAGTTTTTGGCCTTATCTTGCAGGTGACGACGACGTCGTGTTGACGGCAGAGAAAGACTGGGCATTCAGGCGAGCCGCCC
GGTGGTGTGGTACGTAGTGGGTTTAGTACGCCCCGCCAAAACGGCTCCGAAACAAACAAAAAGGTGCGTGCCGCACTCACGAAGGACTGCCAGTGATATA
CTGGAGGAAGGTGGGGATGACGTCAAGTCTGCATGGCCTTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGG
CGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCATGCCGCGGT
GAATATGTACCCGGGCCCTGTACACACTGCCC