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Detailed information on CNT30440683


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Aegilops tauschiiOryza sativa81.4725.1299.62787reverse complement
CNT30678576Aegilops tauschiiSetaria viridis36.2369.1797.43350reverse complement
CNT30548882Aegilops tauschiiIpomoea triloba81.2629.7898.6785forward
CNT30378671Aegilops tauschiiArabidopsis thaliana15.6353.5598.01151reverse complement
CNT30632593Aegilops tauschiiVigna unguiculata81.3746.5697.96786forward
CNT30504974Aegilops tauschiiNicotiana attenuata18.1231.6598.86175forward
CNT30635645Aegilops tauschiiCapsicum annuum42.6566.5692.72412forward
CNT3093840Aegilops tauschiiSolanum tuberosum18.5329.0696.65179reverse complement
CNT30221494Aegilops tauschiiHordeum vulgare38.329.7999.19370forward
CNT30400759Aegilops tauschiiTriticum turgidum1008299.48966forward
CNT30569653Aegilops tauschiiActinidia chinensis32.7147.0996.84316reverse complement
CNT30585815Aegilops tauschiiMusa acuminata81.9932.6395.33792forward
CNT30234810Aegilops tauschiiBrassica oleracea36.4446.593.75352reverse complement
CNT30554921Aegilops tauschiiOryza glaberrima14.2939.0998.55138forward
CNT30147394Aegilops tauschiiMedicago truncatula81.1639.3698.47784forward
CNT30247816Aegilops tauschiiAvena sativa62.3228.8299.83602forward
CNT30662061Aegilops tauschiiTriticum dicoccoides10050.3499.48966reverse complement
CNT3081478Aegilops tauschiiBrassica juncea76.9264.1694.89743forward
CNT30460491Aegilops tauschiiSaccharum spontaneum5.0724.2693.8849forward
CNT30143344Aegilops tauschiiLolium perenne101.1443.6797.03977reverse complement
CNT3016633Aegilops tauschiiZea mays102.4851.8195.76990reverse complement
CNT30229838Aegilops tauschiiAnanas comosus42.3492.3398.53409reverse complement
CNT30218527Aegilops tauschiiKalanchoe fedtschenkoi55.5936.0699.26537reverse complement
CNT3067373Aegilops tauschiiLeersia perrieri28.9992.7299.64280forward
CNT30655299Aegilops tauschiiRosa chinensis81.1627.6398.98784forward
CNT30210912Aegilops tauschiiHelianthus annuus81.2636.8497.2785forward
CNT30689128Aegilops tauschiiTriticum urartu95.0349.3898.69918forward
CNT30595506Aegilops tauschiiOryza meridionalis35.7131.36100345reverse complement
CNT30369805Aegilops tauschiiOryza glumipatula81.2654.7497.83785forward
CNT30154718Aegilops tauschiiPrunus persica27.0237.6691.19261forward
CNT30420891Aegilops tauschiiPapaver somniferum61.0821.9792.54590reverse complement
CNT30318721Aegilops tauschiiAsparagus officinalis7.7630.2486.6775forward
CNT3037914Aegilops tauschiiCucumis melo40.2718.2889.72389forward
CNT30148178Aegilops tauschiiBrachypodium distachyon13.1558.899.21127reverse complement
CNT30104648Aegilops tauschiiOryza rufipogon48.4580.2798.72468reverse complement
CNT30575706Aegilops tauschiiOryza barthii81.4732.2997.46787forward
CNT30582488Aegilops tauschiiEchinochloa crusgalli81.2664.6699.87785forward
CNT30495774Aegilops tauschiiDigitaria exilis40.6899.2499.75393reverse complement
CNT30116696Aegilops tauschiiOryza nivara81.4719.8599.75787reverse complement

Expression of CNT30440683

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLSKPIHLSETEESGISCVGVKSVDLRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCRKR*

>peptide 2 (58 aa)
MRLRRNCHQVTCQRYYLIECQHVAVLSARISPLGAGAFRSTFTCEPKSSCPRPTETYL*

>peptide 3 (40 aa)
MTGLEEEAPANSVPAAAVRRGGQVFFGMTGRKGHVGGESG*

>peptide 4 (30 aa)
PTGGSSGESWTMGESPIQQYRVSEEGQCRL*

Sequence

>CNT30440683
CCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTT
TCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAAT
GACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACA
GAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTG
CGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCAGGGGCCCAGCTAAC
GCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATA
CAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTAACAGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCA
GCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCCTAAGGAGAAATTGCCACCAAGTGACG
TGCCAGCGCTACTACTTGATTGAGTGTCAGCACGTAGCTGTGCTTTCAGCAAGAATTTCACCATTGGGAGCCGGTGCCTTTCGAAGCACTTTCACGTGTG
AACCGAAGTCGTCTTGCCCAAGACCCACGGAGACCTACCTATAGTGATGTCAAAGTACCAGTGAGC