Detailed information on CNT30366518


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672456Sorghum bicolorSetaria viridis81.4859.8697.73264forward
CNT30521002Sorghum bicolorSetaria italica81.4858.5497.35264reverse complement
CNT30548989Sorghum bicolorIpomoea triloba43.5210.2581.56141reverse complement
CNT30632593Sorghum bicolorVigna unguiculata23.154.4490.6775reverse complement
CNT3093840Sorghum bicolorSolanum tuberosum23.1512.1890.6775forward
CNT30304298Sorghum bicolorTriticum aestivum96.311.7993.27312forward
CNT30220487Sorghum bicolorHordeum vulgare82.4149.8192.51267forward
CNT30400948Sorghum bicolorTriticum turgidum96.312.4893.27312forward
CNT30569652Sorghum bicolorActinidia chinensis23.1512.588875forward
CNT30147394Sorghum bicolorMedicago truncatula43.527.0881.56141forward
CNT30435015Sorghum bicolorAegilops tauschii96.327.6891.67312forward
CNT30247816Sorghum bicolorAvena sativa10015.5187.96324reverse complement
CNT30662061Sorghum bicolorTriticum dicoccoides96.316.2693.27312forward
CNT30143344Sorghum bicolorLolium perenne100.3114.5389.85325forward
CNT3017904Sorghum bicolorZea mays96.318.9695.51312forward
CNT30655385Sorghum bicolorRosa chinensis43.525.9982.27141reverse complement
CNT30209714Sorghum bicolorHelianthus annuus37.0415.8388.33120reverse complement
CNT30721611Sorghum bicolorTriticum spelta35.1924.7392.98114forward
CNT30151602Sorghum bicolorBrachypodium distachyon45.0629.1497.26146forward
CNT30581589Sorghum bicolorEchinochloa crusgalli96.331.9798.08312forward

Expression of CNT30366518

Peptides detected in this lncRNA

>peptide 1 (33 aa)
GILAFMPSLPPPPTRLVTKPNQTSMLTGTLTSL*

>peptide 2 (31 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGSSAISP*

Sequence

>CNT30366518
TGGAATACTGGCCTTCATGCCGAGTCTTCCTCCGCCGCCAACTCGACTCGTAACCAAGCCTAACCAAACCTCCATGCTCACTGGTACTTTGACGTCACTA
TAGGTAGGTCTCCGTGGGTCTTGAGTTCGGCAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTCTTGCTG
AAAGCACAGCTACGTGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCTATTTCTCCTTAGGCGCATGTCTCAGCAACACAAA
ACGAGGGTTTTGCTCTAAGTTTCC