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Detailed information on CNT30104648


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Oryza rufipogonOryza sativa100.1718.6499.14584forward
CNT30678576Oryza rufipogonSetaria viridis49.0656.5296.15286forward
CNT30521002Oryza rufipogonSetaria italica19.7325.599.13115reverse complement
CNT30548924Oryza rufipogonIpomoea triloba79.2536.8197.62462reverse complement
CNT30378671Oryza rufipogonArabidopsis thaliana25.953.5596.69151forward
CNT30632593Oryza rufipogonVigna unguiculata79.0727.3197.61461reverse complement
CNT30635645Oryza rufipogonCapsicum annuum70.6766.5691.75412reverse complement
CNT3093840Oryza rufipogonSolanum tuberosum30.729.0695.53179forward
CNT30304298Oryza rufipogonTriticum aestivum80.2717.6998.5468forward
CNT30220645Oryza rufipogonHordeum vulgare30.8739.8297.78180forward
CNT30400948Oryza rufipogonTriticum turgidum80.2718.7298.5468forward
CNT30569653Oryza rufipogonActinidia chinensis45.4539.4996.6265forward
CNT30585815Oryza rufipogonMusa acuminata79.9319.294.64466reverse complement
CNT30554921Oryza rufipogonOryza glaberrima23.6739.0997.1138reverse complement
CNT30147394Oryza rufipogonMedicago truncatula79.7623.3497.2465reverse complement
CNT30440683Oryza rufipogonAegilops tauschii80.2748.4598.72468reverse complement
CNT30247816Oryza rufipogonAvena sativa80.2722.498.29468reverse complement
CNT30662061Oryza rufipogonTriticum dicoccoides80.2724.3998.5468forward
CNT3081478Oryza rufipogonBrassica juncea76.3338.4394.83445reverse complement
CNT30460491Oryza rufipogonSaccharum spontaneum8.424.2693.8849reverse complement
CNT30143344Oryza rufipogonLolium perenne80.2720.9298.93468forward
CNT3017904Oryza rufipogonZea mays82.3329.1695.62480forward
CNT30655385Oryza rufipogonRosa chinensis79.7619.7597.63465reverse complement
CNT30203595Oryza rufipogonHelianthus annuus79.7625.3897.2465reverse complement
CNT30689128Oryza rufipogonTriticum urartu80.2725.1798.72468reverse complement
CNT30721611Oryza rufipogonTriticum spelta20.2425.698.31118forward
CNT30595506Oryza rufipogonOryza meridionalis55.9229.6499.08326forward
CNT30369805Oryza rufipogonOryza glumipatula100.1740.7397.95584reverse complement
CNT30420891Oryza rufipogonPapaver somniferum78.2216.9893.42456forward
CNT30323793Oryza rufipogonAsparagus officinalis20.2437.3497.46118reverse complement
CNT30151602Oryza rufipogonBrachypodium distachyon20.2423.55100118forward
CNT30575706Oryza rufipogonOryza barthii100.1723.9696.58584reverse complement
CNT30582488Oryza rufipogonEchinochloa crusgalli79.9338.3998.93466reverse complement
CNT30495774Oryza rufipogonDigitaria exilis67.4199.2498.73393forward
CNT30116696Oryza rufipogonOryza nivara100.1714.7399.14584forward

Expression of CNT30104648

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MQHLYEISTIPLRTCFVVHMSRASKVLRVVSN*

>peptide 2 (29 aa)
MLSHPSVGRDPESCLRFWRSFVDLRISPLH

>peptide 3 (42 aa)
DLTSSPPSSSISLAVPRECGTHLFLCFGAGRVLLPLRTTISP*

>peptide 4 (66 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLILFAPHAFTPQRR*

Sequence

>CNT30104648
GGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTCGGAGCGGGGCGCGTACTA
TTACCACTACGTACCACAATTTCTCCTTAGGCGCATGTCTCAGCAACACAAAACGAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACGACACG
AGCTGACGACAGCCATGCAGCACCTGTATGAAATCAGTACCATCCCGTTAAGGACATGTTTTGTTGTTCATATGTCAAGGGCTAGTAAGGTTTTGCGCGT
TGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCAC
GCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCTTGTTCGCTCCCCATGCTTT
CACACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACAC