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Detailed information on CNT30554921


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678562Oryza glaberrimaSetaria viridis37.9633.7594.78134reverse complement
CNT30521002Oryza glaberrimaSetaria italica22.6617.7410080forward
CNT30548989Oryza glaberrimaIpomoea triloba39.0910.0497.83138forward
CNT30378671Oryza glaberrimaArabidopsis thaliana39.0948.9497.83138reverse complement
CNT30632593Oryza glaberrimaVigna unguiculata39.098.1897.83138forward
CNT30637323Oryza glaberrimaCapsicum annuum38.249.5694.81135forward
CNT3093840Oryza glaberrimaSolanum tuberosum37.9621.7597.01134reverse complement
CNT30220645Oryza glaberrimaHordeum vulgare38.5330.0998.53136reverse complement
CNT30400759Oryza glaberrimaTriticum turgidum38.8111.6398.54137forward
CNT30569652Oryza glaberrimaActinidia chinensis39.0923.1597.83138reverse complement
CNT30585815Oryza glaberrimaMusa acuminata39.095.6996.38138forward
CNT30147394Oryza glaberrimaMedicago truncatula39.096.9398.55138forward
CNT30440683Oryza glaberrimaAegilops tauschii39.0914.2998.55138forward
CNT30248040Oryza glaberrimaAvena sativa38.2410.0399.26135reverse complement
CNT30662061Oryza glaberrimaTriticum dicoccoides39.097.1997.83138reverse complement
CNT3081478Oryza glaberrimaBrassica juncea39.0911.9294.93138forward
CNT30263944Oryza glaberrimaBrassica rapa20.112.991.5571reverse complement
CNT3068455Oryza glaberrimaLeersia perrieri26.0628.498.9192reverse complement
CNT30655385Oryza glaberrimaRosa chinensis39.095.8698.55138forward
CNT30203595Oryza glaberrimaHelianthus annuus39.097.5397.1138forward
CNT30369805Oryza glaberrimaOryza glumipatula39.099.6298.55138forward
CNT30420891Oryza glaberrimaPapaver somniferum39.095.1493.48138reverse complement
CNT30318721Oryza glaberrimaAsparagus officinalis15.321.7788.8954forward
CNT30104648Oryza glaberrimaOryza rufipogon39.0923.6797.1138reverse complement
CNT30577776Oryza glaberrimaOryza barthii10047.5799.43353forward
CNT30495774Oryza glaberrimaDigitaria exilis39.0934.8599.28138reverse complement
CNT3049694Oryza glaberrimaCucumis sativus18.722.2292.4266reverse complement

Expression of CNT30554921

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MTAILERRESTSLWGRFAKPYQPLTYEQQNLSLKGWY*

Sequence

>CNT30554921
TTTGGTAAATTTTGTTGTATGGATATACAACTGTCGGGGCTGGCTTGGTTGACATTGGTATATAGTCTATATTATACTGTTAAATAAAAAGCCTTCTATT
ATCTTTCTAGTTAATACGTGTGCTTAGGAGTCCTTGCAATTTGAATAAACCAAGATCTTACCATGACTGCAATTTTAGAGAGACGCGAAAGTACAAGCCT
GTGGGGTCGCTTCGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTAAAGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCT
GTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAGCG