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Detailed information on CNT30632593


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Vigna unguiculataOryza sativa59.1231.8597.6998reverse complement
CNT30678576Vigna unguiculataSetaria viridis20.7369.1795.71350reverse complement
CNT30524653Vigna unguiculataSetaria italica19.3727.398.17327forward
CNT30550263Vigna unguiculataIpomoea triloba80.2111.7496.311354forward
CNT30378671Vigna unguiculataArabidopsis thaliana8.9553.5597.35151reverse complement
CNT30504983Vigna unguiculataNicotiana attenuata34.5432.0297.43583forward
CNT30635645Vigna unguiculataCapsicum annuum29.881.2692.25503forward
CNT3093840Vigna unguiculataSolanum tuberosum19.7954.2293.11334reverse complement
CNT30304298Vigna unguiculataTriticum aestivum59.1237.7297.29998reverse complement
CNT30221494Vigna unguiculataHordeum vulgare34.8347.3496.77588forward
CNT30400948Vigna unguiculataTriticum turgidum59.1239.9297.49998reverse complement
CNT30569652Vigna unguiculataActinidia chinensis18.7853.1997.16317reverse complement
CNT30585815Vigna unguiculataMusa acuminata61.0842.4893.791031forward
CNT30234810Vigna unguiculataBrassica oleracea44.91100.1392.61758reverse complement
CNT30554921Vigna unguiculataOryza glaberrima8.1839.0997.83138forward
CNT30147394Vigna unguiculataMedicago truncatula69.6158.9998.471175forward
CNT30440683Vigna unguiculataAegilops tauschii46.5681.3797.96786forward
CNT30247816Vigna unguiculataAvena sativa4233.9497.88709forward
CNT30662061Vigna unguiculataTriticum dicoccoides59.1252.0197.6998reverse complement
CNT3081478Vigna unguiculataBrassica juncea44.4364.7793.6750forward
CNT30460491Vigna unguiculataSaccharum spontaneum2.924.2693.8849forward
CNT30143344Vigna unguiculataLolium perenne64.8748.9596.891095reverse complement
CNT3016633Vigna unguiculataZea mays65.0557.4694.351098reverse complement
CNT30229838Vigna unguiculataAnanas comosus26.6101.3595.99449reverse complement
CNT30218527Vigna unguiculataKalanchoe fedtschenkoi56.2263.7397.15949reverse complement
CNT3067373Vigna unguiculataLeersia perrieri16.4792.0597.84278forward
CNT30655385Vigna unguiculataRosa chinensis65.3446.8498.011103forward
CNT30203595Vigna unguiculataHelianthus annuus77.6171.5195.951310forward
CNT30689128Vigna unguiculataTriticum urartu59.1253.6896.89998forward
CNT30721611Vigna unguiculataTriticum spelta13.2748.5999.55224reverse complement
CNT30366518Vigna unguiculataSorghum bicolor4.4423.1590.6775reverse complement
CNT30595506Vigna unguiculataOryza meridionalis20.4431.3698.55345reverse complement
CNT30369805Vigna unguiculataOryza glumipatula56.9367.0296.15961forward
CNT30154718Vigna unguiculataPrunus persica3380.3895.87557forward
CNT30420891Vigna unguiculataPapaver somniferum38.0323.991.12642reverse complement
CNT30318721Vigna unguiculataAsparagus officinalis4.4430.2486.6775forward
CNT3037914Vigna unguiculataCucumis melo24.6419.5590.38416forward
CNT30147862Vigna unguiculataBrachypodium distachyon8.5354.7597.22144reverse complement
CNT30104648Vigna unguiculataOryza rufipogon27.3179.0797.61461reverse complement
CNT30575706Vigna unguiculataOryza barthii56.8739.3995.62960forward
CNT30582488Vigna unguiculataEchinochloa crusgalli59.1282.2197.9998forward
CNT30495774Vigna unguiculataDigitaria exilis23.2899.2498.73393reverse complement
CNT30116696Vigna unguiculataOryza nivara59.1225.1797.7998reverse complement
CNT30604605Vigna unguiculataOryza punctata5.0937.2391.8686reverse complement

Expression of CNT30632593

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGSSTPGSPGSTTAGPNHTKKKSLILAQKER*

>peptide 2 (32 aa)
MCTVLFEKERIREARHARFEDARPEQATDLAH*

>peptide 3 (67 aa)
SRLRILGILSGCMILVESPNPFITKEAHQYKRILILQVEWLSILPTEVAWEHMPIYICVLFFSKKKE*

>peptide 4 (63 aa)
MLSKPIHLSETEESGISCVGVKSADLRRNAKSEGSSLGPYRRWSAKAWGANGIRYPGSPCRKR*

>peptide 5 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 6 (42 aa)
MTGLEEEAPANSVPAAAVRRGGGGRVFFGMTGRKGHVGGESG*

Sequence

>CNT30632593
GATCTCGTCTGAGGATCCTCGGCATTCTGAGTGGATGTATGATTCTAGTCGAAAGCCCTAATCCATTCATCACAAAAGAAGCGCATCAGTACAAGCGGAT
ATTGATCCTGCAAGTGGAGTGGCTCTCCATACTACCTACAGAGGTAGCTTGGGAGCACATGCCTATATATATATGTGTACTGTTCTTTTCGAAAAAGAAA
GAATAAGAGAAGCAAGGCATGCAAGGTTTGAAGACGCTCGACCGGAACAAGCAACGGACTTAGCGCACTAGCGCGAAAGCCTATAGCGTTAGGACGCGCT
CTTGCTGGGAGAGGATGGGAAGTAGTACGCCCGGTTCACCAGGTTCTACCACTGCAGGGCCCAATCATACTAAAAAGAAGAGTTTGATCCTGGCTCAGAA
GGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCGTGAAGGTTGCTTGTCTCG
CCCAGGAGGTGGGAACAGTTGAAAACAAAGTGGCGAACGGGTGCGTAATGCGTGGGAATCTGCCGAACAGTTCGGGCCCAATCCTGAAGAAAGCTAAAAA
GCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACT
GGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGG
GCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGG
GGGGGGGGGGGGCGAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAACTGGTGGAATGC
TCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAGATCTACGAAGGAACGCCAAAAGCGAAGGCAG
CTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTT
GGTCTACGTGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACA
AGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAACCAAACCAGTCCTTAACGGGATGGTACTGACT
TTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGC
GCCTAAGGATAAAGTCTTTGCAACCGAAGTGAGCCGAGGAGCCGAGTGACGCGCCAGCGCTACTAATTGAGTGCCAGCACGTAGCTGTGCTGTCAGTAAG
AAGGGAGCCGGCGCCTTTCGAATTCGAAGCACTTTCTAGTGTGCGCTGTTTTTTGATTGCAGCTAGCGAGCAAGAAAACGGATGCGCG