Detailed information on CNT30220645


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378671Hordeum vulgareArabidopsis thaliana31.195097.87141forward
CNT30635645Hordeum vulgareCapsicum annuum57.341.8491.12259reverse complement
CNT3093840Hordeum vulgareSolanum tuberosum59.7343.8392.96270forward
CNT30569652Hordeum vulgareActinidia chinensis59.7345.393.7270forward
CNT30554921Hordeum vulgareOryza glaberrima30.0938.5398.53136reverse complement
CNT30420891Hordeum vulgarePapaver somniferum37.176.2594.05168forward
CNT30148178Hordeum vulgareBrachypodium distachyon27.6557.8799.2125forward
CNT30104648Hordeum vulgareOryza rufipogon39.8230.8797.78180forward
CNT30581589Hordeum vulgareEchinochloa crusgalli95.844.3694433forward
CNT30495774Hordeum vulgareDigitaria exilis31.4235.8699.3142forward

Expression of CNT30220645

Peptides detected in this lncRNA

>peptide 1 (41 aa)
PPSPTRRRRNQFQPNLHAHWYFDVTIGRSPWVLGRTTSVHT*

>peptide 2 (30 aa)
MKVSTILLRTGFVVHMSRAGKVLLFICQGLE

>peptide 3 (50 aa)
MVKFLLKAQLRAGTQSSSSAGTSLGSSAHFGGNFSLGACLSNTKRGFRSL*

Sequence

>CNT30220645
CCTCCGTCGCCAACTCGACGTCGTCGTAACCAATTTCAACCAAACCTCCATGCTCACTGGTACTTTGACGTCACTATAGGTAGGTCTCCGTGGGTCTTGG
GCAGGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTACGTGCTGGCACTCAATC
AAGTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCTCACTTCGGTGGCAATTTCTCCTTAGGCGCATGTCTCAGCAACACAAAACGAGGGTTTCGCTCG
TTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCTGTTAAGGACAGGTTTTGTTGT
TCATATGTCAAGGGCTGGTAAGGTTTTGTTGTTCATATGTCAAGGGCTGGAA