Detailed information on CNT30678562


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378671Setaria viridisArabidopsis thaliana35.0149.2994.24139forward
CNT3093840Setaria viridisSolanum tuberosum37.0323.8694.56147forward
CNT30554921Setaria viridisOryza glaberrima33.7537.9694.78134reverse complement
CNT30148178Setaria viridisBrachypodium distachyon30.9856.9495.12123forward

Expression of CNT30678562

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MKVSTIPLRTGFVVHMSRAGNVSHVSWAPDPRRPRANTHRLQHGLPGYLILFAPNAFASQRW*

>peptide 2 (50 aa)
MLSHPSVGRDPKSCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFRHF

Sequence

>CNT30678562
ACAAAATGAGGGTTTCGCTTGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGATGACAGCCATGCAACACATGTATGAAAGTTAGTACCATCCC
ATTAAGGACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAATGTTTCACACGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGT
TTACAGCATGGACTACCAGGGTATCTAATCCTGTTCGCTCCCAATGCTTTCGCATCCCAGCGTTGGTAGGGACCCAAAGAGCTGCCTTCGCTTTTGGCGT
TCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTT