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Detailed information on CNT30495774

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697843	Digitaria exilis	Oryza sativa	99.24	12.54	100	393	forward
CNT30678576	Digitaria exilis	Setaria viridis	62.88	49.21	96.39	249	forward
CNT30521002	Digitaria exilis	Setaria italica	21.72	19.07	100	86	reverse complement
CNT30550263	Digitaria exilis	Ipomoea triloba	99.24	3.41	98.98	393	reverse complement
CNT30378671	Digitaria exilis	Arabidopsis thaliana	38.13	53.55	98.68	151	forward
CNT30632593	Digitaria exilis	Vigna unguiculata	99.24	23.28	98.73	393	reverse complement
CNT30635645	Digitaria exilis	Capsicum annuum	95.2	60.9	92.84	377	reverse complement
CNT3093840	Digitaria exilis	Solanum tuberosum	36.36	23.38	97.22	144	forward
CNT30177674	Digitaria exilis	Secale cereale	20.96	4.09	95.18	83	forward
CNT30304298	Digitaria exilis	Triticum aestivum	99.24	14.85	99.49	393	forward
CNT30220645	Digitaria exilis	Hordeum vulgare	35.86	31.42	99.3	142	forward
CNT30400759	Digitaria exilis	Triticum turgidum	99.24	33.36	99.49	393	reverse complement
CNT30569653	Digitaria exilis	Actinidia chinensis	57.58	33.98	98.68	228	forward
CNT30585815	Digitaria exilis	Musa acuminata	99.24	16.19	96.18	393	reverse complement
CNT30538116	Digitaria exilis	Brassica napus	30.05	9.82	91.6	119	reverse complement
CNT30554921	Digitaria exilis	Oryza glaberrima	34.85	39.09	99.28	138	reverse complement
CNT30147394	Digitaria exilis	Medicago truncatula	99.24	19.73	98.47	393	reverse complement
CNT30440683	Digitaria exilis	Aegilops tauschii	99.24	40.68	99.75	393	reverse complement
CNT30247816	Digitaria exilis	Avena sativa	99.24	18.81	99.24	393	reverse complement
CNT30662061	Digitaria exilis	Triticum dicoccoides	99.24	20.48	99.49	393	forward
CNT3081478	Digitaria exilis	Brassica juncea	99.24	33.94	96.18	393	reverse complement
CNT30460491	Digitaria exilis	Saccharum spontaneum	12.37	24.26	93.88	49	reverse complement
CNT30143344	Digitaria exilis	Lolium perenne	99.24	17.57	100	393	forward
CNT3017904	Digitaria exilis	Zea mays	102.78	24.73	96.07	407	forward
CNT30218527	Digitaria exilis	Kalanchoe fedtschenkoi	45.71	12.16	99.45	181	forward
CNT3067373	Digitaria exilis	Leersia perrieri	27.02	35.43	100	107	reverse complement
CNT30655385	Digitaria exilis	Rosa chinensis	99.24	16.69	98.98	393	reverse complement
CNT30203595	Digitaria exilis	Helianthus annuus	99.24	21.45	98.47	393	reverse complement
CNT30689128	Digitaria exilis	Triticum urartu	99.24	21.14	99.24	393	reverse complement
CNT30595506	Digitaria exilis	Oryza meridionalis	73.23	26.36	100	290	forward
CNT30369805	Digitaria exilis	Oryza glumipatula	99.24	27.41	99.24	393	reverse complement
CNT30420891	Digitaria exilis	Papaver somniferum	99.24	14.63	93.89	393	forward
CNT30318721	Digitaria exilis	Asparagus officinalis	18.43	29.44	86.3	73	reverse complement
CNT30148178	Digitaria exilis	Brachypodium distachyon	32.07	58.8	100	127	forward
CNT30104648	Digitaria exilis	Oryza rufipogon	99.24	67.41	98.73	393	forward
CNT30575706	Digitaria exilis	Oryza barthii	99.24	16.13	96.95	393	reverse complement
CNT30582488	Digitaria exilis	Echinochloa crusgalli	99.24	32.37	100	393	reverse complement
CNT30116696	Digitaria exilis	Oryza nivara	99.24	9.91	100	393	forward

Expression of CNT30495774

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLILFAPHAFAPQRR*

Sequence

>CNT30495774
GAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCCGTTAAGG
ACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAATTCC
TTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTA
CGGCATGGACTACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGCTG