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Detailed information on CNT30147394


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Medicago truncatulaOryza sativa5031.7998.19996reverse complement
CNT30678576Medicago truncatulaSetaria viridis17.5769.1795.14350reverse complement
CNT30548882Medicago truncatulaIpomoea triloba58.3344.0898.111162forward
CNT30378671Medicago truncatulaArabidopsis thaliana7.5853.5598.01151reverse complement
CNT30632593Medicago truncatulaVigna unguiculata58.9969.6198.471175forward
CNT30635645Medicago truncatulaCapsicum annuum22.4972.3792.63448forward
CNT3093840Medicago truncatulaSolanum tuberosum10.8935.2397.7217reverse complement
CNT30304298Medicago truncatulaTriticum aestivum5037.6497.89996reverse complement
CNT30400948Medicago truncatulaTriticum turgidum5039.8498.09996reverse complement
CNT30569653Medicago truncatulaActinidia chinensis15.8647.0995.89316reverse complement
CNT30585815Medicago truncatulaMusa acuminata51.4642.2394.731025forward
CNT30554921Medicago truncatulaOryza glaberrima6.9339.0998.55138forward
CNT30440683Medicago truncatulaAegilops tauschii39.3681.1698.47784forward
CNT30247816Medicago truncatulaAvena sativa35.2933.6598.44703forward
CNT30662061Medicago truncatulaTriticum dicoccoides5051.998.19996reverse complement
CNT3081478Medicago truncatulaBrassica juncea37.3564.2594.76744forward
CNT30460491Medicago truncatulaSaccharum spontaneum2.4624.2693.8849forward
CNT30143344Medicago truncatulaLolium perenne51.9146.2298.071034reverse complement
CNT3016633Medicago truncatulaZea mays50.752.8596.831010reverse complement
CNT30655299Medicago truncatulaRosa chinensis51.6636.2698.451029forward
CNT30203595Medicago truncatulaHelianthus annuus59.0964.2595.921177forward
CNT30689128Medicago truncatulaTriticum urartu5053.5897.49996forward
CNT30721611Medicago truncatulaTriticum spelta11.2448.5999.55224reverse complement
CNT30366518Medicago truncatulaSorghum bicolor7.0843.5281.56141forward
CNT30595506Medicago truncatulaOryza meridionalis17.3231.3697.68345reverse complement
CNT30369805Medicago truncatulaOryza glumipatula48.2967.0996.15962forward
CNT30420891Medicago truncatulaPapaver somniferum29.6221.9791.53590reverse complement
CNT30318721Medicago truncatulaAsparagus officinalis3.7730.2486.6775reverse complement
CNT30147862Medicago truncatulaBrachypodium distachyon7.2354.7598.61144reverse complement
CNT30104648Medicago truncatulaOryza rufipogon23.3479.7697.2465reverse complement
CNT30575706Medicago truncatulaOryza barthii48.0939.3196.24958forward
CNT30582488Medicago truncatulaEchinochloa crusgalli5082.0498.49996forward
CNT30495774Medicago truncatulaDigitaria exilis19.7399.2498.47393reverse complement
CNT30116696Medicago truncatulaOryza nivara5025.1298.29996reverse complement
CNT30604605Medicago truncatulaOryza punctata4.3237.2391.8686reverse complement

Expression of CNT30147394

Peptides detected in this lncRNA

>peptide 1 (32 aa)
SSFCFVNVICVGSMYLPKLAWQNNLSQSEEPA*

>peptide 2 (30 aa)
MEGGPKGLAFFRPIWTSAISLPLAGLIELS*

>peptide 3 (34 aa)
MTWKVDQKVWRFSGLFGHRQSACLLLALSNYHKR*

>peptide 4 (33 aa)
MSVRPWSTWIRGPANALNTPPGEYGRKTETQRN*

>peptide 5 (40 aa)
MTGLEEEAPANSVPAAAVRRGGQVFFGMTGRKGHVGGESG*

>peptide 6 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 7 (42 aa)
MPRILWKERDGVSLAFSFPPIYPYFIHKARAFGYSFLRMITV*

>peptide 8 (47 aa)
MLSKPIHLSETEESGISCVGVKSADQRRNAKSEGSSLGPYRRWSAKA*

>peptide 9 (58 aa)
MSRTGWKEPSPYSLVARTDLLIILLLYRRHEARVLAICGQCRLNFGRDLNNRTSERKL*

>peptide 10 (29 aa)
MGFLSLSLFLQSILILYTRQEPSGILFFG*

Sequence

>CNT30147394
AGTAGTTTTTGTTTCGTGAACGTGATTTGTGTGGGGTCAATGTACTTGCCGAAACTCGCTTGGCAGAATAATCTTAGCCAAAGCGAAGAACCGGCTTGAC
ATGCCGCGAATCCTCTGGAAAGAGAGGGATGGGGTTTCTCTCGCTTTCTCTTTTCCTCCAATCTATCCTTATTTTATACACAAGGCAAGAGCCTTCGGGT
ATTCTTTTCTTCGGATGATAACGGTATGACCAAAAGGGCGAGACCCAGGAGTATTGATGTCTAGGACCGGGTGGAAGGAGCCATCTCCATACTCTCTAGT
GGCACGAACTGACCTCCTAATTATATTATTATTATATAGAAGGCATGAAGCTCGCGTTCTCGCAATCTGCGGTCAATGCCGGTTGAACTTCGGCAGAGAC
CTTAACAATAGAACCTCAGAACGGAAACTTTAAACATTGATGGTATGTGGAGGATCCGGCCTCACGCAACCAAGGCTTTCCAAGTAGTAAGTTGAATGAA
GTGAGGATATCTATGACATGGAAGGTGGACCAAAAGGTTTGGCGTTTTTCAGGCCTATTTGGACATCGGCAATCAGCCTGCCTCTTGCTGGCCTTATCGA
ATTATCATAAGCGGTGATAGTTTGATCCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGA
AGGAAAAGAGGCTCCTAGCGTGAAGGTAGCTTGTCTCGCCCAGGAGGTGGGAACAGTTGAAAACAAAGTGGCGAACGGGTGCGTAATGCGTGGGAATCTG
CCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTAAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAA
TGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGC
GAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAG
CCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTG
AAAGTTAAAGTCGCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCA
GATCAACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATAGGGAGCGAACGGGATTAGATACCCTGGTA
GTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGTGGATCAGGGGCCCAGCTAACGCGTTAAACACTCCGCCTGGGGAGTACGGTCGCAAGACC
GAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAA
GAAAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAG
CGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCCTAAGGAGAAAGTCTTTGCAACCGAAGTGAGCCGAGGAGCCGAGTGACGCGCCGGCTCCCTTCTTA
CTGACAGCACAGCTACGTGCTGGCACTCAATTAGTAGCGCTGGCGCGTCACTCGGCTCCTCGGCTCACTTCGGTTGCAAAGACTTTCTCCTTAGGCGCAT
GTCTCAGCAACACAAAACGAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTA