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Detailed information on CNT30247816


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678576Avena sativaSetaria viridis16.6168.5897.41347reverse complement
CNT30548882Avena sativaIpomoea triloba33.726.7198.72704forward
CNT30632593Avena sativaVigna unguiculata33.944297.88709forward
CNT30635645Avena sativaCapsicum annuum22.4575.7790.62469forward
CNT3093840Avena sativaSolanum tuberosum11.338.3192.37236reverse complement
CNT30400759Avena sativaTriticum turgidum33.6559.6899.72703forward
CNT30569653Avena sativaActinidia chinensis15.1347.0996.84316reverse complement
CNT30585815Avena sativaMusa acuminata33.6528.9795.31703forward
CNT30147394Avena sativaMedicago truncatula33.6535.2998.44703forward
CNT30440683Avena sativaAegilops tauschii28.8262.3299.83602forward
CNT3081478Avena sativaBrassica juncea26.8548.4594.83561forward
CNT30229838Avena sativaAnanas comosus21.2110098.19443reverse complement
CNT30218527Avena sativaKalanchoe fedtschenkoi30.5442.8599.22638reverse complement
CNT3067373Avena sativaLeersia perrieri13.492.7299.64280forward
CNT30655385Avena sativaRosa chinensis33.2729.5198.99695forward
CNT30210912Avena sativaHelianthus annuus33.8933.2297.03708forward
CNT30366518Avena sativaSorghum bicolor15.5110087.96324reverse complement
CNT30595506Avena sativaOryza meridionalis16.5231.3699.42345reverse complement
CNT30369805Avena sativaOryza glumipatula33.849.2396.88706forward
CNT30104648Avena sativaOryza rufipogon22.480.2798.29468reverse complement
CNT30575706Avena sativaOryza barthii33.6528.8598.01703forward
CNT30495774Avena sativaDigitaria exilis18.8199.2499.24393reverse complement
CNT30604605Avena sativaOryza punctata4.6942.4290.8298reverse complement

Expression of CNT30247816

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLSKPIHLSETEESGISCVGVKSVDLRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCRKR*

>peptide 2 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 3 (36 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKA*

>peptide 4 (35 aa)
MQVERCFRGAGQKEKRLLAKFVSPCFKMEGRTLRL*

Sequence

>CNT30247816
TTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAATTTGTCTCGCCCTGCTTCAAAATGGAAGGGCGC
ACGCTACGGCTTTGACCTAACGGCCTCCGAAAAAAGAATCGGAATAGTTGAGAACAAAGTGGCGAACGGGTGCGTAATGTGTGGGAATCTGCCGAACAGT
TCGGGCCAAATCCTAAAGAAAGCTCAAAAGTGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTA
GCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCTG
ATGCAGCAATATAGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTA
ACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAG
TCGCNNNNNNNNNNAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGA
GACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCC
GCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGCAA
GTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTC
ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTA
CCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACGCGGATCA
GGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCATGT
GGTTTAATTCGATACANNNNNNNNNNACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAA
AGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAG
TGTTCGCCCTTGGTCTATGCGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCTTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGG
GGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTAACGGGA
TGGTACTGACTTTCATACAGGTGCTACATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTG
CTGAGACATGCGCCTAAGGAGAAATTGCCACCGAAGTTTCAAAGGAGCCGAGTGACGTGCCAGCGCTACTACTTGATTGAGTGTCAGCACAGGCTTTCAG
CAAGAATTTCACGGAGCCGGTGCCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTTCAAACTCAAGACCCACGGAGACCTACCTATAGTGACGT
CAAAGTACCAGTGAGCATGGAGGTTTGGTTAGGCTTGGTTACGACGACGTTGAGTCTAAGGCGGAGGAAGACTCGGCATGAAGGCCAGC