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Detailed information on CNT30378671


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Arabidopsis thalianaOryza sativa53.554.8298.68151forward
CNT30678562Arabidopsis thalianaSetaria viridis49.2935.0194.24139forward
CNT30521002Arabidopsis thalianaSetaria italica30.1418.8598.8285reverse complement
CNT30548816Arabidopsis thalianaIpomoea triloba53.5514.898.01151forward
CNT30632593Arabidopsis thalianaVigna unguiculata53.558.9597.35151reverse complement
CNT30637323Arabidopsis thalianaCapsicum annuum53.5510.6994.7151reverse complement
CNT3093840Arabidopsis thalianaSolanum tuberosum50.7123.2196.5143forward
CNT30298950Arabidopsis thalianaTriticum aestivum53.5510.4598.01151forward
CNT30220645Arabidopsis thalianaHordeum vulgare5031.1997.87141forward
CNT30384430Arabidopsis thalianaTriticum turgidum53.5511.4598.01151forward
CNT30569652Arabidopsis thalianaActinidia chinensis53.5525.3497.35151forward
CNT30585815Arabidopsis thalianaMusa acuminata53.556.2296.69151reverse complement
CNT30554921Arabidopsis thalianaOryza glaberrima48.9439.0997.83138reverse complement
CNT30147394Arabidopsis thalianaMedicago truncatula53.557.5898.01151reverse complement
CNT30440683Arabidopsis thalianaAegilops tauschii53.5515.6398.01151reverse complement
CNT30248040Arabidopsis thalianaAvena sativa53.5511.2298.01151forward
CNT30662061Arabidopsis thalianaTriticum dicoccoides53.557.8797.35151forward
CNT3081478Arabidopsis thalianaBrassica juncea53.5513.0496.03151reverse complement
CNT30143344Arabidopsis thalianaLolium perenne53.556.7598.68151forward
CNT3017904Arabidopsis thalianaZea mays53.559.1798.01151forward
CNT30655385Arabidopsis thalianaRosa chinensis53.556.4198.68151reverse complement
CNT30210912Arabidopsis thalianaHelianthus annuus53.557.0997.35151reverse complement
CNT30369805Arabidopsis thalianaOryza glumipatula53.5510.5398.01151reverse complement
CNT30420891Arabidopsis thalianaPapaver somniferum53.555.6292.72151forward
CNT30319422Arabidopsis thalianaAsparagus officinalis25.538.7986.1172reverse complement
CNT30148178Arabidopsis thalianaBrachypodium distachyon45.0458.898.43127forward
CNT30104648Arabidopsis thalianaOryza rufipogon53.5525.996.69151forward
CNT30577776Arabidopsis thalianaOryza barthii48.9418.697.83138reverse complement
CNT30582488Arabidopsis thalianaEchinochloa crusgalli53.5512.4498.68151reverse complement
CNT30495774Arabidopsis thalianaDigitaria exilis53.5538.1398.68151forward
CNT30116696Arabidopsis thalianaOryza nivara53.553.8198.68151forward

Expression of CNT30378671

Peptides detected in this lncRNA

>peptide 1 (32 aa)
ALSHFLVKRGASCNQTQAQTRKGLERRRLPSY*

Sequence

>CNT30378671
AGCCCTTTCGCACTTCTTAGTAAAGCGCGGCGCTAGCTGCAATCAAACTCAAGCGCAGACTAGAAAGGGCTTGGAAAGGCGCCGTCTCCCTTCTTACTGA
GAGCAGAGCTAGTTGCTGTCACTCAATTACTAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACC
TGTATGAAAGTGAGTACCATCCCGTTAAGGATAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTAT