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Detailed information on CNT30400759


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678576Triticum turgidumSetaria viridis29.869.3797.15351reverse complement
CNT30521002Triticum turgidumSetaria italica28.1873.6194.58332forward
CNT30635645Triticum turgidumCapsicum annuum34.9766.5692.48412forward
CNT3093840Triticum turgidumSolanum tuberosum15.1128.996.63178reverse complement
CNT30554921Triticum turgidumOryza glaberrima11.6338.8198.54137forward
CNT30440683Triticum turgidumAegilops tauschii8210099.48966forward
CNT30247816Triticum turgidumAvena sativa59.6833.6599.72703forward
CNT3037914Triticum turgidumCucumis melo35.1419.4589.37414forward
CNT30148178Triticum turgidumBrachypodium distachyon10.758.3399.21126reverse complement
CNT30495774Triticum turgidumDigitaria exilis33.3699.2499.49393reverse complement

Expression of CNT30400759

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 2 (40 aa)
MTGLEEEAPANSVPAAAVRRGGQVFFGMTGRKGHVGGESG*

>peptide 3 (58 aa)
MRLRRNCHRVTCQRYYLIECQHVAVLSARISPLGAGAFRSTFTCEPKSSCPRPTETYL*

>peptide 4 (63 aa)
MLSKPIHLSETEESGISCVGVKSVDLRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCRKR*

>peptide 5 (36 aa)
MCRGEIRRSTKERQKRRQLSGSLPTLGCESMGSEQD*

>peptide 6 (29 aa)
MEVWLKLVTTTSSWRRRKTRHEGQKMVWNV

Sequence

>CNT30400759
GCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGG
GACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGC
AATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGG
GGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAA
CCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCATGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGG
GTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGAGTGTTCGCCCTTGGTCTACG
CGGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGG
AGCATGTGGTTTAATTCGATACAACGTGCAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTAACAGGATGGTACTGACTTTCATACA
GGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCTCGTTTTGTGTTGCTGAGACATGCGCCTAAGG
AGAAATTGCCACCGAGTGACGTGCCAGCGCTACTACTTGATTGAGTGCCAGCACGTAGCTGTGCTTTCAGCAAGAATTTCACCATTGGGAGCCGGTGCCT
TTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCCAAGACCCACGGAGACCTACCTATAGTGACGTCAAAGTACCAGTGAGCATGGAGGTTTGGT
TGAAATTGGTTACGACGACGTCGAGTTGGCGGCGGAGGAAGACTCGGCATGAAGGCCAGAAAATGGTGTGGAACGTAG