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Detailed information on CNT30298950


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378671Triticum aestivumArabidopsis thaliana10.4553.5598.01151forward
CNT3093840Triticum aestivumSolanum tuberosum12.3929.0696.65179forward

Expression of CNT30298950

Peptides detected in this lncRNA

>peptide 1 (40 aa)
PPPTQRRRNQFQPNLHAHWYFDITIGRSPWVLGKMTSVHT*

>peptide 2 (38 aa)
MVKFLLKAQLGAGTQSSSSASTSLGGNFSLGAFLSNTK*

>peptide 3 (66 aa)
MLHRLCRTSSIPLSFGLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLILFAPHPFAPQRR*

>peptide 4 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPMGVRAVSQSQCG*

Sequence

>CNT30298950
CCGCCGCCAACTCAACGTCGTCGTAACCAATTTCAACCAAACCTCCATGCTCACTGGTACTTTGACATCACTATAGGTAGGTCTCCGTGGGTCTTGGGCA
AGATGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGCACCGGCTCCCAATGGTGAAATTCTTGCTGAAAGCACAGCTAGGTGCTGGCACTCAATCAAG
TAGTAGCGCTAGCACGTCACTCGGTGGCAATTTCTCCTTAGGCGCATTTCTCAGCAACACAAAATGAGGGTTTCGCTCGTTATAGGACTTGACCAAACAT
CTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCTGTTAAGGACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAA
GGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGACCTCGTCAATTCCTTTGAGTTTTGGTCTTGCGACCGTACTCCCCAGGC
GGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTGTTCGC
TCCCCATCCTTTCGCACCCCAGCGTCGGTAGAGACCCAGAGAGCTGCCTTCGCTTTTGGTGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAA
ATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCC
CTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCCGTCTTACCACGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTTGAGTCCTGTCATGA
TCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACT
GCTGCCCCCCATGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCCGA
CCAACTACCTAATACTACGCAGGCTCATCAAACAGCGCTTTTGAGCTTTCTTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCC
GTTCGCCACTTTGTTCTCAACTATTCCGATTCCAGCAAATGGAGGCCGTTAGGTCAAAGCCGTAGCGCGCGCCCTGTAGTTTTGAAGCAGGGCGAGACAA
CTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGAT
CAAACTCAGATTTTGACTATGATTAGGCGGGGACAGGATTCGAAC