Detailed information on CNT30148178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678562Brachypodium distachyonSetaria viridis56.9430.9895.12123forward
CNT30378671Brachypodium distachyonArabidopsis thaliana58.845.0498.43127forward
CNT3093840Brachypodium distachyonSolanum tuberosum58.820.6297.64127forward
CNT30220645Brachypodium distachyonHordeum vulgare57.8727.6599.2125forward
CNT30400759Brachypodium distachyonTriticum turgidum58.3310.799.21126reverse complement
CNT30440683Brachypodium distachyonAegilops tauschii58.813.1599.21127reverse complement
CNT3054019Brachypodium distachyonAmborella trichopoda27.315.0188.1459forward
CNT30104398Brachypodium distachyonOryza rufipogon56.4829.998.36122forward
CNT30495774Brachypodium distachyonDigitaria exilis58.832.07100127forward

Expression of CNT30148178

Peptides detected in this lncRNA

>peptide 1 (40 aa)
KAQLRAGTQSSSSAGTSLGSSAHFGGNFSLGLDQTSHDTS*

>peptide 2 (29 aa)
KHSYVLALNQVVALARHSAPRLTSVAISP*

Sequence

>CNT30148178
GAAAGCACAGCTACGTGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCTCACTTCGGTGGCAATTTCTCCTTAGGACTTGAC
CAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTCAGTACCATCCCGTTAAGGACAGGTTTTGTTGTTCATATGTCAAGGG
CTGGTAAGGTTTTGCG