Detailed information on CNT30480888


BLAST search results

BLAST vs Swiss-Prot:
sp|P50892|RT12_RAPSA, E-value = 1e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3093840Arabidopsis halleriSolanum tuberosum14.6721.2784.73131reverse complement
CNT30401117Arabidopsis halleriTriticum turgidum41.5547.3292.18371forward
CNT3081668Arabidopsis halleriBrassica juncea26.4342.45100236forward
CNT30624505Arabidopsis halleriDaucus carota26.5429.2291.56237forward
CNT30681383Arabidopsis halleriTriticum urartu71.4472.2588.87638forward

Expression of CNT30480888

Peptides detected in this lncRNA

>peptide 1 (60 aa)
PEASSIHIDLGFSAPYFDLPLLRPGIPIKSFTPRIQWDFTPGESLTLPPLINTVECSCEL*

>peptide 2 (45 aa)
MTNQLIKRGHYSLSFLFPPILCPITLLPIRSTPFPFIEKSNRQNK*

>peptide 3 (34 aa)
MDQNPNRSILLGGTAQGKKKVTSRSGIKNKIETR*

>peptide 4 (39 aa)
MFLRIMTFARNVSKYIMSIAQPYFGYLTWSGIRFFRCSR*

>peptide 5 (44 aa)
QRHLPFISIWVFLHHILICLFFDPEFPSNPLLLEYNGILHLANL*

Sequence

>CNT30480888
CCAGAGGCATCTTCCATTCATATCGATTTGGGTTTTTCTGCACCATATTTTGATCTGCCTCTTCTTCGACCCGGAATTCCCATCAAATCCTTTACTCCTC
GAATACAATGGGATTTTACACCTGGCGAATCTTTAACTCTACCTCCTCTTATTAACACCGTAGAATGTTCCTGCGAATTATGACCTTCGCCCGGAATGTG
AGCAAATATATCATGTCGATTGCTCAACCGTACTTTGGCTATCTTACGTGGAGCGGAATTAGGTTTTTTCGGTGTTCTCGTTGAAACACGCGGGCATACT
CCTGTTTTCTGGGGACATTTATCCAAAGCTCGAGTACGGTCCGTGCGCCGTTTTTCTTCTCTACCATGACGAATCAATTGATTAAACGTGGGCATTATTC
TCTTTCCTTTCTTTTTCCCCCCATTTTGTGCCCTATCACTTTACTCCCGATCCGAAGCACCCCTTTTCCATTCATAGAGAAATCCAATCGTCAAAATAAA
TAAAAAGGCCATCATGGACCAAAATCCAAACAGATCAATCTTGTTGGGAGGTACTGCCCAAGGAAAGAAAAAGGTTACTTCCAGATCAGGGATTAAAAAT
AAAATTGAAACAAGATAAAATCGTATATCGAAACGACTTCTGGCATCACCGGAAGGATCGAAACCACATTCGTAGGCCGACAATTTTTCTGGGTAGGTAG
AACTATTGGAAGCAAATGGAAAAGGAACACCGAGTAGGATCAAAGAAACTAGCAGACTAATCACTAAATAGATAGAAATTGGTGCAAATTCTGACATCAT
TACAGCCCACTTTGTTTTCTCGCTCCTTGCTGGCGAAGAAGCGGCATATCGAAAAATAAAGAAAGAAGCAAAAGCCCATCCCGAAAGGCTTGC