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Detailed information on CNT30655369


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8W0|CYB6_ATRBE, E-value = 2e-139

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535418Rosa chinensisEucalyptus grandis5.8250.1583.93168forward
CNT30315736Rosa chinensisCorylus avellana9.2197.7990.23266forward
CNT3019759Rosa chinensisCitrullus lanatus9.4974.6691.61274forward
CNT30730483Rosa chinensisCorchorus capsularis15.41100.9186.97445forward
CNT30407229Rosa chinensisBeta vulgaris9.5980.9989.89277forward
CNT30632354Rosa chinensisVigna unguiculata21.9943.8591.02635forward
CNT30199319Rosa chinensisPisum sativum15.5822.3792.89450forward
CNT30504292Rosa chinensisNicotiana attenuata42.4268.6788.491225forward
CNT30708642Rosa chinensisGlycine max8.5551.7892.31247forward
CNT3090242Rosa chinensisSolanum tuberosum12.4330.7190.53359forward
CNT30193370Rosa chinensisSecale cereale22.7840.7489.36658forward
CNT30286546Rosa chinensisTriticum aestivum22.2343.2989.1642forward
CNT30226752Rosa chinensisHordeum vulgare6.345.3990.11182forward
CNT30398533Rosa chinensisTriticum turgidum5.1247.5992.57148forward
CNT30543576Rosa chinensisBrassica napus35.3989.1889.921022forward
CNT30554238Rosa chinensisOryza glaberrima24.1765.1790.11698forward
CNT30439089Rosa chinensisAegilops tauschii22.7840.4788.91658forward
CNT30667320Rosa chinensisTriticum dicoccoides12.1958.8690.06352forward
CNT30309624Rosa chinensisCamelina sativa12.3384.3691.01356forward
CNT30131654Rosa chinensisLolium perenne5.3752.7284.52155forward
CNT30230699Rosa chinensisAnanas comosus10.1550.1793.52293forward
CNT30210627Rosa chinensisHelianthus annuus37.129189.181072forward
CNT30679835Rosa chinensisTriticum urartu1636.0187.66462forward
CNT30622073Rosa chinensisCajanus cajan12.5390.2794.48362forward
CNT30595910Rosa chinensisOryza meridionalis10.3510088.96299forward
CNT30357898Rosa chinensisLactuca sativa50.6673.388.171463forward
CNT30422352Rosa chinensisPapaver somniferum16.255.9192.09468forward
CNT30574487Rosa chinensisVitis vinifera21.64101.386.56625forward
CNT3057481Rosa chinensisAmborella trichopoda4.5737.588.64132forward
CNT3025179Rosa chinensisPopulus trichocarpa10.253794.93296forward
CNT3035458Rosa chinensisCucumis melo60.4694.6986.881746forward
CNT30104480Rosa chinensisOryza rufipogon13.2675.5487.73383forward
CNT30499024Rosa chinensisDigitaria exilis22.242.1288.3641forward
CNT30117031Rosa chinensisOryza nivara22.234.890.02641forward
CNT30556546Rosa chinensisPanicum hallii9.1468.9386.74264forward
CNT30336835Rosa chinensisCynara cardunculus10.2147.3585.76295forward

Expression of CNT30655369

Peptides detected in this lncRNA

>peptide 1 (41 aa)
GRRNGFWNLLTFSKKGTVNNPAGTETIKRTPNNLFGTVRSI*

>peptide 2 (42 aa)
MGRLRPCNWPLSPYRGFLHTKDLLVTNIVEPLFFFRSLVSLR*

>peptide 3 (43 aa)
METATLVAIFLSGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD*

>peptide 4 (38 aa)
MSNQDLSGTPTYSQSNKIKTKSNKAILYQTTCLRVVGSP

>peptide 5 (38 aa)
MGLTRWLEQRHIFVVNSNVADKDIYLHGPINSSSHTLP*

>peptide 6 (41 aa)
MWQIKTYICTARSIVQVTHSHNPFYLRRIRFNYKCQKYRFL*

Sequence

>CNT30655369
GGACGACGAAATGGATTTTGGAATTTATTAACATTCTCCAAAAAAGGTACTGTTAATAATCCCGCGGGTACTGAAACCATTAAAAGAACACCCAATAACT
TATTTGGCACTGTACGAAGTATTTGAAATACGGGAAAGAAATACCATTCGGGCAATATTTCCAAAGGAGTTGCAAATGGATCCGCGGGTTCACCAATCAT
TGATGGTTCTAAAACAGCTAAGCCTACGTTACATGCAATAGTACCTAAAATTACTACTGGAAAAATATATAAAAGATCATTTGGCCATGCGGGTTCTCCA
TAATAATTATGACCCATCCCTTTAGCCAATTTAGCTCTTAACACAGGATCGTTCAAGTCAGGTTTTTTTGTTATTAGGATAGGTGAATTATTCTATATCC
ATCCCCCGAAAGAACCGGACATGATAATTTTTCATCATCCAGCTCGAGCATGAATCAACGGAACCAAATGGATCGGATCCATATAAAAAAATGGATATGT
TATCCACACATATATGAATGATTCTATGTAAGAAAAAATTCATCAGATTCCCTTTTTCGCAGGTGTAACAACTACCCATTGCAAGGAATTCGGACCTTAC
AGATAAATGCTCAATACCCAAGTAGGCTTACAACGTTGATTATAATCAAGTGCTTTATGGGTCGTCTCAGACCTTGCAATTGGCCTTTATCCCCCTATCG
AGGCTTTTTACATACAAAGGATTTACTTGTTACTAATATAGTCGAGCCTCTGTTCTTCTTTAGATCCCTTGTTTCACTCCGATAGTATCATACATAAATC
GAGTCAATGCAGAGGAAATGAATACATTTCTATACTATTTAGTAAGTGCAATAGATAAAGCATAATCTGGATTATGCCAATCACTTATTCTACTGGATCT
TACGGAGCCAGTTCATATCATATACGACACGACCGGGTCTGATCATAGAAAGGATTCTCTTCAAACGAACCAGCCTATCCTCTGTATGGGGCTTACGCGA
TGGTTGGAACAAAGACACATTTTTGTTGTAAATTCAAATGTGGCAGATAAAGACATATATCTGCACGGCCCGATCAATAGTTCAAGTCACACACTCCCAT
AATCCATTTTATCTTCGGAGAATTCGCTTCAACTATAAGTGTCAAAAATATAGATTTTTGTAGAGTTGAAGAGAAATATCCAAATACATGTCTTATTTTT
TTCAATAATCCATATTTGTAGCAATGAAATACTGTTGTTCCTACCCCAAGTGATAAATGATTAATTCAAAATATTAATGGTATAGAGTCTTCCTTATAAA
GGGCCCGAAATACCTTGTTTACGTATCATTGGGAAATGCATTAACATAAATACGGCAGTAAGAAGAGGTAATACAAAAGTGTGTAAACTATAAAAACGGG
TCAAAGTGGATTGTCCCACACTAGCACTTCCGCGTAATAACTCTACCAGGGGCGATCCTATTACAGGAATAGCATCAGGCACGCCCGTTACAATTTTTAC
TGCCCAATAACCAATTTGGTCCCAAGGTAAGGAATAACCAGTTACACCAAAAGATGCGGTTAATACACCCAAAACCACACCTGTAACCCAAGTCAATTCA
CGAGGTTTTTTAAAACCACCGGTGAGATACACACGAAATACGTGCAGAATCATCATTAGGACCATCATACTTGCCGACCATCGATGAACTGATCGGATTA
ACCAACCAAAGTTAACTTCAGTCATTATATATTGAACAGAAGCAAAAGCCTCTGTAACGGTCGGACGATAATAAAAAGTCATAGCAAACCCCGTAGCTAC
TTGTACTAAAAAACAAGTAAGCGTAATTCCTCCTAGACAATAAAATATGTTGACGTGAGGAGGAACATATTTACTAGTTATATCATCTGCAATTGCCTGA
ATCTCAAGACGTTCTTCGAACCAATCATAGATTTTACTCATATTCCGGAAATACAGAAAAAAAGAAATTCCACGGTCGAACTACCAAAATAGAATGGGAT
AAAAATCAGAAAACTAAACGCTTCACTTTGGATTGAAAAAGCTAGTTAATGGTTCTTGTAAATCTAATTCATTGAAATTCCATCCAGTAAAATGGAAGAA
TTATAAATCTCCAAAATAATAGATAGAAATACTGCAAATAGAGCCATTGCAAGACCCATCAAAGGAGTAGTTCCCCAACCAGGAGCTACTTTACCATATT
CTGAATTCAATGGTTTCAATAAACTCCCGGCATTAGTTCGTTTTGGGCGGCCAGATCTAGAACTACCCTCAACGGTTTGTGTAGCCATAATATTTTATAT
TCATTAAGATCTGTTGACTTTGTATACCATTCCGTTGTAAATAAATGATCTTATCATAGATCCATTGTGGTCTTAAAACTACATAATGTCTTAAAACTAT
ATAATAATGGAAACAGCAACCCTAGTCGCCATCTTTTTATCTGGTTTACTTGTAAGTTTTACTGGGTACGCCTTATATACTGCGTTTGGGCAACCCTCTC
AACAACTAAGAGATCCATTCGAGGAACACGGGGACTAGTCGAAATAATGAAAAATCATTTCACCCTTTTACTTTTTAGTTGGAACTTTAGGCGGTTCGCG
AAAAAAGATAGCGAAAAAAATTATTCCTAGAGTTGAGACTAAAAGGAATGTATAAACCAATGCTTCCATAGATTCGATCGTGGTTTACAATTATAGCTTC
CATACCTGTTTATTTTGGACCGTCTCCCGGATAAAGAAAGAACAAAAGTCAAAGAAAAGGCAGCGAGTCAAATGTCAAATCAAGATTTATCCGGTACCCC
AACCTATAGTCAGTCAAATAAAATAAAAACGAAAAGTAACAAAGCAATATTGTATCAAACTACCTGTCTTCGTGTAGTTGGATCTCCA