Detailed information on CNT30570838


BLAST search results

BLAST vs Swiss-Prot:
sp|O82598|TIP13_ARATH, E-value = 2e-48

BLAST vs NONCODE:
NONGMAT001209, E-value = 4e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698182Vitis viniferaQuercus lobata32.7822.0481.88138forward
CNT30618329Vitis viniferaSesamum indicum45.1315.4180190forward
CNT30708635Vitis viniferaGlycine max49.8836.9181.9210forward
CNT30635699Vitis viniferaCapsicum annuum32.546.1980.29137forward
CNT30310654Vitis viniferaCamelina sativa50.3653.9478.77212forward
CNT30598709Vitis viniferaFraxinus excelsior27.5544.7983.62116forward
CNT30623609Vitis viniferaDaucus carota31.3523.4983.33132forward
CNT30423726Vitis viniferaPapaver somniferum44.6613.7980.85188forward
CNT3031788Vitis viniferaTheobroma cacao49.8829.3379.05210forward
CNT30113856Vitis viniferaFicus carica28.2711.8585.71119forward
CNT30334322Vitis viniferaCynara cardunculus36.8233.4180.65155forward

Expression of CNT30570838

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MLRRMPHPPECWLQQSNQWQGVRLSPHCPSSGQWQSRTPCKPAQKSSRSQEQTHSTLLLQKISQMRML

>peptide 2 (41 aa)
MDAPSNAPPARMLAATIKPMARGAIIPTLPFLGSMAVAYTV*

Sequence

>CNT30570838
GCCCTGATGACAATAATGCTGAAATCCACGACAACATTGAAAACAAGAAAACAAGAAATCAAAAAACTCGAACCAGAATAAAATAGATACAATGAAAAGC
CGTTGGCCGGAGCGGCCATACGAATCTACGATGTTATTGAACTAGAACTCGGAGCCAGTGGTTGGTCCAGTCCCAGCTCACCAGAGCAGGCCCAAACGAC
ATAGCCGGATTCATGGATGCTCCGTCGAATGCCCCACCCGCCAGAATGTTGGCTGCAACAATCAAACCAATGGCAAGGGGTGCGATTATCCCCACATTGC
CCTTCCTCGGGTCAATGGCAGTCGCGTACACCGTGTAAACCAGCCCAAAAGTCATCACGATCTCAAGAACAAACGCATTCCACACTGTTACTCCAGAAGA
TATCGCAAATGCGGATGTTGT