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Detailed information on CNT30509931


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DO54|TIP12_MUSAC, E-value = 4e-42

BLAST vs NONCODE:
NONGMAT001209, E-value = 2e-09

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513791Solanum lycopersicumJuglans regia8.747.9980.84167forward
CNT30503973Solanum lycopersicumNicotiana attenuata12.334.5588.98236forward
CNT30708635Solanum lycopersicumGlycine max6.2521.0981.67120forward
CNT30635699Solanum lycopersicumCapsicum annuum25.3321.9689.3486forward
CNT3093986Solanum lycopersicumSolanum tuberosum40.1344.4394.81770forward
CNT30598709Solanum lycopersicumFraxinus excelsior7.4555.2186.71143forward
CNT30623609Solanum lycopersicumDaucus carota9.4832.3880.22182forward
CNT3031788Solanum lycopersicumTheobroma cacao14.0737.7179.63270forward
CNT30334322Solanum lycopersicumCynara cardunculus9.7440.379.68187forward

Expression of CNT30509931

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MYSTYFTGIYFSISIRFIVKRKVLHIIIWIIFLKRL*

>peptide 2 (32 aa)
MVCCGCTSNCHTCRVNDYTVPIDANYVKVKIN*

>peptide 3 (44 aa)
MPPVANSRRAQAAVDPSNCAMMYKIPRNKVMFPPTKAPKVTAGLT

>peptide 4 (47 aa)
FKTNQNILFTTIKIKKINNKSRPNKQSTIQQCPLNIDKQTKKFTKRK*

>peptide 5 (60 aa)
MTILSLLTLKNSHVYNFFFTTFSERFMDILPKRSAKARNYLSHCYTWYVVVVLQTVTHVE*

Sequence

>CNT30509931
TTTTAAAACAAATCAAAATATCTTATTTACCACGATCAAAATAAAGAAAATAAATAACAAAAGCCGTCCGAATAAACAAAGTACAATTCAACAGTGCCCA
TTAAACATAGACAAACAAACAAAGAAGTTTACAAAGAGAAAATGAAAATTAAACAACGAGTTGATAAAAATTCAGCACTACTTAAAAATCTCCACTTGGG
ATTTGCTCATGAGTGTGGCTAATGAAGATGAATTCATAGATGAATCCAGCAAGCCCACCACCAATAAGTGGTCCAGCTAACCAAAGATGGGCCAAATGAC
ACAGCTGGGTTCATTGAAGCTCCAGTAAAGGCACCACCAGCAAGAATGTTGGCACCAACAATGAAACCAATTGCAATTGGTGCAATCACACCCAAATCTC
CCTTCTTTGGGTCAACTGCGGTTGCGTAAACAGTGTAAACGAGACCGAAAGTCATCACAATCTCGAATACGAACGCGTTCCATACTGATACACCGGCTGA
CAATGCAAATGATCCCGTGCTCTGCGTAGATTTTTAACCATCACAATTATTAGACTCGTACAAATATTTGAGAAATTTGTAACATAGGACTATTTTTTTC
ACTATTCAAAGATACCTAACGGACATGATAATGTTAGGTGGAGTAATTAAATTGGCTTTCATAAATAGCATACTAAATTAATTGCTTTAAATAAAGTCAC
CATCATATTACTATCTTACATAATGAGAGGACAATAAGTCCCTTTCAAAATAGATATAAAAAGATTTTTAACCAATCAATTATGAGTTTCAAATTTATGC
ATTATAAAATAATCTAATGTGTGTAACAATTTGGCCCAAGCCAAACTGTTAACAGTCATTTTCTCTATTTAAGATAATACTTAAATTTTAATTGAATTAA
TAAAAGTATAGTTTGATGTATTCTACTTACTTCACTGGTATATATTTCAGTATTAGTATTCGTTTTATCGTAAAACGGAAAGTACTCCATATAATAATAT
GGATAATTTTTTTGAAAAGGTTATAATATTTCATTTTACCGTATAAAAGGTTTTTTTAGTTCTTTTCATTTTTCACCAATGTTAATATCCATATTAGAGC
TTCACAAAATCAAAATTCACCGAAAAGTTCCGCATTAAAGAAGTAAAATATTCCCTAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACCCAACTTTGTT
ATCACTCCATAACAACCTCATACTTCAAAGTTCTACCGTTCATTATCCGTTTGAAGATTAAAAAGCAAAAATAAAATATGTATGCTTTTTATATCTGACA
TAAGTCAGCATTAGAAAAGCAAATGACCATACTCTCCCTACTTACACTAAAAAATAGCCACGTGTATAATTTTTTCTTCACTACTTTTTCAGAAAGGTTT
ATGGATATACTTCCTAAAAGATCTGCAAAAGCTCGAAATTACCTCTCACATTGTTACACATGGTATGTTGTGGTTGTACTTCAAACTGTCACACATGTAG
AGTAAATGACTATACAGTCCCTATTGACGCTAACTATGTAAAAGTCAAAATTAATTAAATGTCAAGCCTAAAGTCATAAAAATTAAATCCAATAATAATA
CAACTGAATAATTAGTGAGATGTGTACATTATTTGAACTCTAAAAAAGGTCAGTCACAAGTAACCTGTTTTTTTTTCAATATTACGACAAAAGTATAACA
ACTATAAAATTCAATAATAAATTTTATAATTCGTGTAAAATTAAAATACGACAAATAAATTGAGAGATCGAAAATAGGCTTACCATGCCACCGGTGGCGA
ATTCAAGGAGAGCGCAAGCAGCAGTGGATCCAAGCAACTGTGCAATGATGTACAAAATTCCACGGAACAAAGTGATGTTTCCACCAACAAAAGCACCGAA
GGTAACAGCAGGGTTGACG