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Detailed information on CNT3093986


BLAST search results

BLAST vs Swiss-Prot:
sp|P0DO54|TIP12_MUSAC, E-value = 9e-43

BLAST vs NONCODE:
NONGMAT001209, E-value = 9e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513791Solanum tuberosumJuglans regia9.6447.9980.24167forward
CNT30503973Solanum tuberosumNicotiana attenuata14.7137.3489.41255forward
CNT30708635Solanum tuberosumGlycine max6.9221.0983.33120forward
CNT30635699Solanum tuberosumCapsicum annuum21.1216.5493.17366forward
CNT30509931Solanum tuberosumSolanum lycopersicum37.5633.9295.55651forward
CNT30146727Solanum tuberosumMedicago truncatula7.0420.8285.25122forward
CNT30598709Solanum tuberosumFraxinus excelsior8.2555.2185.31143forward
CNT30623609Solanum tuberosumDaucus carota10.1631.3280.11176forward
CNT3031788Solanum tuberosumTheobroma cacao16.4539.879.3285forward

Expression of CNT3093986

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MDILPRRSAKARYYISHCYTWYVVVCTSYCHTCRVNDYTVPIDAKYVSQK*

>peptide 2 (36 aa)
MSHYLKISTWDLLMSVANEDEFIDKSSKPTTNKWSS*

>peptide 3 (40 aa)
MEKKSTPYSNTGVIFLKGHNITFYGIKGFLGQFFAFLIRC*

Sequence

>CNT3093986
ATATTTCTGAAAAAATCAAAATACCTTATTTACCACGAGCAAAATAAAGAAAATAAATAGCAAAAGCCGTCCGAATACACAAAGTACAAATTCAACGGTG
CCCATTAAACATAGACACAAACAAACAAAGAAGTTTACAAAGAGAAAATTAAAATTAAACAACAAGTTGATAAAATGTCACATTACTTAAAAATCTCCAC
TTGGGATTTGCTCATGAGTGTGGCTAATGAAGATGAATTCATAGATAAATCCAGCAAGCCCACCACCAATAAGTGGTCCAGCTAATCAAAGATGGGCCAA
ATGACACAGCTGGGTTCATTGAAGCTCCAGTAAAGGCTCCACCAGCTAGAATGTTGGCACCAACAATGAAACCAATTGCAATTGGTGCAATCACTCCCAA
ATCTCCCTTCTTTGGGTCAACTGCAGTTGCGTAAACAGTGTAAACGAGACCGAACGTCATCACTATCTCGAATACAAATGCGTTCCATACTGATACACCG
GCTGACAATGCAAATGATCCAGTGCTCTGCGTAGATTTTTAACCATCACAATTATTAGTATCGTACAAATATTAAAAAATGTGTAACATAGGAATATTTT
TTTTAATATTCAAAGCTAACTAACGGACATGATAATGTTAGGTGGAGTAATTAAATTGGCTTTCATAAATAGTATGCTAGATTAAATGCTTTAAATAAAG
TCACCATCATATTACTATCTTACATAATGAGAGGACAATAAGTCCCTTTCAAAAGAGATATAAAAAGATTTTTAACCAATCAATTATGAGTTTCAAATTT
ATGCATTATAAAATAATCTGATGTGTGTCACAACAAACAATGACTAGAACCTTCTCAAGATAAAAGACTTTTGGCACAAGCCAAAACTCTAAAACTGTCA
TATTCTCTATTTAAGATAATACTTAATTTTAATGGTATAAATGTATAGTTTAATGTATTCTACTAATTCCACTAGTTCATAACAGTATTAGTTTTTGTTT
TACAAGCTAGGCAAAATTTCATGGAAAAAAAAAGTACTCCATATAGTAATACAGGAGTAATTTTTTTAAAAGGTCATAATATTACATTTTATGGTATAAA
AGGTTTTTTGGGTCAATTTTTTGCATTTCTCATCCGGTGTTAAATTCACATTAAAGCCCCATTAAATTTAAGTTTATTAAAAAAATTCACATTAAAGAGT
AAAATATTTTCTAACAAAAGCAAAAATAACTTAAATCATTCCATAACAACCTCATACTTCAAAATTCTACCGTTCATTATCCGTTTTAAGATAAAATAAA
AAGCAAAAATAATAATATATGTATACTTTTTACATCTGACACAAGTCAGCATTAGAAAGTAAATGACCATACTCTCCCTATTGACACTAAAAAATAGCCA
CGTGTATAATTTTCCTTCACTACTTTTTCAGAAAGGTTGAACGAATGGATATACTTCCTAGAAGATCTGCAAAAGCTAGATATTACATCTCACATTGTTA
CACATGGTATGTTGTGGTTTGTACTTCATACTGTCACACATGTAGAGTAAATGACTATACAGTCCCTATTGACGCTAAATACGTAAGTCAAAAATAATTA
AATGTCAAGCCTAAATTCGTACGAAATTAATTAAATCCAATAATAATACAACTGAATATGTAGTGAGATATGCACATTATTTGGACACTTAAAAAGGTCA
GTCACAAGTTACCTGTTTTTTTTAAGCATATGA