Detailed information on CNT30503973


BLAST search results

BLAST vs Swiss-Prot:
sp|P50156|TIP11_ORYSJ, E-value = 5e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Nicotiana attenuataIpomoea triloba17.2832.7882.2118forward
CNT30708635Nicotiana attenuataGlycine max22.8427.4280.77156forward
CNT30635699Nicotiana attenuataCapsicum annuum34.9910.889.12239forward
CNT3093986Nicotiana attenuataSolanum tuberosum37.3414.7189.41255forward
CNT30509931Nicotiana attenuataSolanum lycopersicum34.5512.388.98236forward
CNT30146734Nicotiana attenuataMedicago truncatula21.2323.4683.45145forward
CNT30612524Nicotiana attenuataArabis alpina12.332.8183.3384forward
CNT30598709Nicotiana attenuataFraxinus excelsior18.8949.8185.27129forward
CNT30623609Nicotiana attenuataDaucus carota20.6425.0982.27141forward
CNT3031788Nicotiana attenuataTheobroma cacao21.8220.8180.54149forward

Expression of CNT30503973

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MNSAKAALSVPDWRSSSWLPTEISLIGMAGKIGSGNRENENFLVLQSH*

>peptide 2 (44 aa)
MLAPTIKPMAIGAITPKSPFFGSTAVAYTVRKQATVDPSNCATM*

>peptide 3 (35 aa)
MFPPTKAPKVTAGLTWPAGVAAPSADSLLKAIPEP*

>peptide 4 (35 aa)
MNILKISTWEWLMGVVDEDEFIDNTSNPTTNKGSS*

Sequence

>CNT30503973
GTCCAATGAACATAGACAAAACAAGGAAAACTCCAAAGAGAAAATGAAAGCAACAGAGGGTGAAATTTCATGAATATCTTAAAAATCTCCACTTGGGAGT
GGCTCATGGGAGTGGTTGATGAAGATGAGTTCATAGACAACACCAGCAATCCCACCACCAACAAGGGGTCCAGCTAACCAAAGCTGGCCCAAATGATACA
GCAGGGTTCATTGAAGCTCCAGTAAAGGCTCCACCAGCTAAAATGTTGGCACCAACAATAAAACCAATGGCAATTGGTGCAATTACTCCCAAGTCTCCCT
TCTTTGGGTCAACAGCAGTGGCATACACAGTGAGGAAGCAAGCAACAGTGGATCCAAGCAACTGTGCAACAATGTAGAGAATCCCACGGAACAAAGTGAT
GTTTCCACCAACGAAAGCACCGAAGGTAACGGCGGGATTAACGTGGCCGGCAGGAGTAGCGGCGCCGTCAGCTGATAGCTTGTTGAAAGCCATACCAGAA
CCCTGACCTGCGAACACGAAGATCAAGGTACAGATGAACTCCGCCAAGGCCGCCTTGAGCGTCCCTGATTGGCGGAGTTCCTCATGGCTTCCAACGGAAA
TTTCGTTGATCGGCATGGCCGGAAAAATTGGATCTGGAAATAGAGAAAATGAAAATTTTCTAGTGCTACAAAGTCACTAAAGG