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Detailed information on CNT30113848


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41963|TIP12_ARATH, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513779Ficus caricaJuglans regia27.9848.7680.56216forward
CNT30698182Ficus caricaQuercus lobata23.3228.7583.89180forward
CNT30373597Ficus caricaArabidopsis thaliana41.1951.1378.93318forward
CNT30727223Ficus caricaCorchorus capsularis36.0119.8180.58278forward
CNT30524746Ficus caricaPhaseolus vulgaris39.5133.7481.97305forward
CNT30708635Ficus caricaGlycine max38.7352.5582.27299forward
CNT30167253Ficus caricaPistacia vera12.6920.1682.6598forward
CNT30154709Ficus caricaPrunus persica12.6931.1191.8498forward
CNT30423736Ficus caricaPapaver somniferum29.2727.6380.53226forward
CNT30706776Ficus caricaPrunus avium12.8235.6192.9399forward
CNT30643380Ficus caricaCannabis sativa18.0129.5187.77139forward
CNT3031788Ficus caricaTheobroma cacao26.1728.2182.18202forward
CNT3050792Ficus caricaCucumis sativus40.1631.0680310forward

Expression of CNT30113848

Peptides detected in this lncRNA

>peptide 1 (39 aa)
WELLVGVGDEEELVDEPSKPTSDQRPNPVDPVAIPGPAN*

>peptide 2 (30 aa)
MLAPTMKPIAMGAIIPKLPFFGSMAVAYTV*

Sequence

>CNT30113848
GTTGGGAGCTGCTCGTGGGTGTGGGAGATGAAGAAGAACTCGTAGATGAGCCCAGCAAGCCCACCTCCGATCAGAGGCCCAACCCAGTAGACCCAGTGGC
TATTCCAGGTCCAGCTAACTAGGGCCGGCCCAAAAGATACTGCCGGGTTCATTGAGGCCCCATCGAACGGCCCACCAGTCAAGATGTTGGCTCCAACAAT
GAAACCAATCGCGATGGGGGCGATAATTCCCAAATTGCCCTTCTTCGGGTCAATGGCTGTGGCGTACACCGTGTAGACCAGTCCGAAGGTCAGCACGATC
TCCAAAACGACAGCGTTCCAGACACCAATTCCGGTTAGACCGAAAGCTGGAATAGCCTGCGAAGCACCGAAATAAAACCCATCCAAAAAAGGAAAAAGTT
AGTTTAGGCCGTTAATAACGTAACTGTATTGAAACTAACTTTGGTGGAAATGATAAACTCACCAAGCCGCCGGTGGAGAACTTGAGGAGGAGGACGGCGA
CGGTGGAGCCGAGGAGCTGGGCGATCCAGTAGAGGATGCCGCGGAGGAGGGTGATGTTGCCGCCGACGAAGATCAAGGTGGAGATGAACTCGGCCAACGC
CGCCTTGAGAGCGTCGGGGTGAGTCGCCTCCTCCCGACCACCGATGGCGATGTTTCGGATCGGCATATTTTTAATGATTTAAGTAATGACGAACGGAAAG
TGATTTCGTTTCTCACCGCCGAGAAGGTGGAGAGTTTAGCTAGTAGCACTAATACTGGTCTCCACTTCTCAG