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Detailed information on CNT30373597


BLAST search results

BLAST vs Swiss-Prot:
sp|P42067|TIP1_MEDSA, E-value = 1e-88

BLAST vs NONCODE:
NONGMAT001209, E-value = 4e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727223Arabidopsis thalianaCorchorus capsularis41.818.5381.15260forward
CNT30524746Arabidopsis thalianaPhaseolus vulgaris57.5639.679.89358forward
CNT30628528Arabidopsis thalianaVigna unguiculata28.6220.0782.02178forward
CNT30708635Arabidopsis thalianaGlycine max52.7357.6480.79328forward
CNT30167253Arabidopsis thalianaPistacia vera17.3622.2282.41108forward
CNT3084637Arabidopsis thalianaVigna radiata56.5930.5880.11352forward
CNT30146734Arabidopsis thalianaMedicago truncatula34.8935.1182.03217forward
CNT3066802Arabidopsis thalianaLeersia perrieri10.7728.2786.5767forward
CNT30623609Arabidopsis thalianaDaucus carota39.0743.2480.66243forward
CNT30619934Arabidopsis thalianaCajanus cajan26.8532.4983.23167forward
CNT30423726Arabidopsis thalianaPapaver somniferum36.0116.4382.14224forward
CNT30113848Arabidopsis thalianaFicus carica51.1341.1978.93318forward
CNT3050792Arabidopsis thalianaCucumis sativus53.0533.0781.52330forward

Expression of CNT30373597

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MSSRSRKRKRSTLLLQQRDQKHEPLQQLRDQKEWWLRFQ*

>peptide 2 (38 aa)
MEAPEKAPPAKMLAPTMKPIAMGAIVPRLPFLGSMAVA*

>peptide 3 (31 aa)
MSSSPPLVRKPRRDSWRLQRKLLQLRCWLQQ*

>peptide 4 (69 aa)
KREINSVVCGWELLVCGVDEENFVDESSDSTADERSGPVDPVVGPCPAHHRWSESHGGIHGGSRESSSS*

>peptide 5 (56 aa)
MPEPEPATTKIKVEMNSANAAFKASGRVASSGRPMAMFLIGMIGRLRFKLQDARRVG

Sequence

>CNT30373597
GAAAAAGAGAGATTAATTCAGTAGTCTGTGGTTGGGAGCTGCTCGTGTGTGGTGTTGATGAAGAAAACTTCGTAGATGAGTCCAGCGATTCCACCGCCGA
CGAGAGGTCCGGCCCAGTAGACCCAGTGGTTGGTCCATGTCCAGCTCACCACCGCTGGTCCGAAAGCCACGGCGGGATTCATGGAGGCTCCAGAGAAAGC
TCCTCCAGCTAAGATGTTGGCTCCAACAATGAAACCGATTGCGATGGGAGCAATTGTTCCAAGACTCCCGTTTTTGGGGTCAATGGCTGTAGCGTAGACG
GTGTAAACAAGCCCGAATGTCATCACGATCTCGAAAACGAAAGCGTTCAACACTCCTACTCCAGCAGAGAGACCAAAAGCATGAGCCACTGCAGCAGCTA
CGAGACCAGAAGGAGTGGTGGCTCCGTTTTCAGTGAGCTTGTTGAAAGCCATGCCAGAGCCTGAACCGGCGACGACAAAGATCAAAGTTGAAATGAACTC
AGCCAACGCCGCCTTTAAGGCATCGGGACGGGTGGCTTCATCTGGACGGCCAATGGCGATGTTTCTGATCGGCATGATCGGACGGCTGAGATTTAAGCTT
CAAGATGCTAGAAGAGTGGGAG