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Detailed information on CNT30727223


BLAST search results

BLAST vs Swiss-Prot:
sp|P42067|TIP1_MEDSA, E-value = 5e-62

BLAST vs NONCODE:
NONGMAT001209, E-value = 2e-23

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513779Corchorus capsularisJuglans regia17.4655.379.18245forward
CNT30373597Corchorus capsularisArabidopsis thaliana18.5341.881.15260forward
CNT30524746Corchorus capsularisPhaseolus vulgaris21.132.7481.42296forward
CNT30708635Corchorus capsularisGlycine max21.152.0281.76296forward
CNT30167253Corchorus capsularisPistacia vera7.220.7882.18101forward
CNT30223457Corchorus capsularisHordeum vulgare6.9132.5585.5797forward
CNT3084637Corchorus capsularisVigna radiata21.125.7282.43296forward
CNT30146734Corchorus capsularisMedicago truncatula12.1927.6783.04171forward
CNT30310654Corchorus capsularisCamelina sativa15.8956.7481.17223forward
CNT3061912Corchorus capsularisArabidopsis lyrata5.9226.0284.3483forward
CNT30612524Corchorus capsularisArabis alpina6.5635.9484.7892forward
CNT30619934Corchorus capsularisCajanus cajan9.1224.988.28128forward
CNT30423736Corchorus capsularisPapaver somniferum13.2622.7481.72186forward
CNT30643380Corchorus capsularisCannabis sativa8.9126.5484125forward
CNT3031788Corchorus capsularisTheobroma cacao11.2622.0785.44158forward
CNT30113848Corchorus capsularisFicus carica19.8136.0180.58278forward
CNT30334320Corchorus capsularisCynara cardunculus16.6130.2279.4233forward
CNT3050792Corchorus capsularisCucumis sativus15.5421.8483.49218forward

Expression of CNT30727223

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MAAATRPAGVVAPLLVSWLKAIPEPEPAKTKTSVEMNSANPCLRVPG*

>peptide 2 (32 aa)
MIKIKRWGEVGSVCLREKRVFLVSGLVSTSQL*

>peptide 3 (52 aa)
MQISFTTPSMMIMMIDDNERSTATMKHKLQRKIIEKKTQQIKYTTGRSPIFM*

>peptide 4 (47 aa)
MVGAANEDELVEDSSDPTANKRSSPVDPVVGPAPANDSWSESNGWVH*

>peptide 5 (66 aa)
MLAPTMKPMAIGAMVPKLPFLGSTAVAYTVYTNPKVITISNTSAFNTPTSAPTEKAGATCARSNVT*

Sequence

>CNT30727223
GCCTTTTTGCCCATTAAGCCAAAAAGAAACTAAAAGAAGGAAAATGAAACCATAGAAATTAACAAAGAAATTAAAATCACACCTACATCAATCCCTGGTT
TTTTTTGGTCATAAGTATATTCCCACACAATATTTTACCAGAGGGCATGCAAATTTCATTCACAACACCTTCCATGATGATCATGATGATCGATGATAAT
GAAAGATCAACGGCCACAATGAAACACAAATTACAAAGGAAAATAATAGAAAAGAAAACTCAACAAATTAAATACACAACCGGAAGAAGCCCGATTTTCA
TGTGACGATTTTATTTAATCAAATCCCATTATTTAATCGTGCGATGTGGATCAAATCCGGATTAGCCGGGACAAACCTCTGAGTACCGAATGGGTACCAA
AAAAATCATCCCATTATTTAATAATCGGCTGTGGGGAGTCGTTCATGGTGGGTGCGGCTAATGAAGACGAACTCGTAGAGGACTCCAGCGATCCCACCGC
CAATAAGAGGTCCAGCCCAGTAGATCCAGTGGTTGGCCCAGCTCCAGCCAACGACAGCTGGTCCGAAAGCAACGGCTGGGTTCATTGAGGCTCCAGAGAA
TGGCCCACCAGCCAAAATGTTGGCCCCAACGATGAAACCGATGGCAATTGGTGCGATGGTTCCCAAACTTCCCTTCTTGGGATCAACGGCTGTGGCGTAC
ACTGTGTACACCAATCCAAAGGTCATCACGATTTCCAACACCAGTGCGTTCAATACTCCAACGTCGGCTCCCACTGAAAAAGCGGGTGCAACCTGCGCGC
GAAGCAACGTAACATAACCCAAGTATTAAATAATATTTATAATAAAAAAATATTAAAAGAAAAAACTGATATTATAACTAACTAATTCATAACGGAAATA
ACTGAAATGGAGAGCTTGCTTACCCAGCCGGCGGTGGCGAATTCGAGTAAAAAGCAAGCGACGATAGAACCGAGGAGTTGAGCGATGATGTAGACGAGAC
CACGGAAGAGAGTGATGTTACCGCCGACGAAAAGGCCGAAGGCATGAGCTATGGCGGCGGCGACAAGACCGGCGGGGGTGGTTGCTCCGTTGCTGGTGAG
CTGGTTGAAGGCGATACCGGAGCCTGAACCGGCAAAGACGAAGACGAGTGTTGAGATGAACTCAGCCAACCCTTGCTTAAGAGTACCGGGGTGAGTTGCC
TCCTCGAACCGGCCGACGGCGATGTTTCTGATCGGCATGTTTACCGTATGATCAAAATCAAGCGGTGGGGGGAAGTGGGGAGTGTTTGTTTGAGAGAGAA
GAGAGTGTTTTTGGTCTCTGGTCTGGTCTCCACTTCTCAGCTTTAGCTCCTACTTATATTTGAAACGGGTGGTCCATGGCGACTGGTATTACTCAGTTTC
CGG