Detailed information on CNT30698182


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518137Quercus lobataJuglans regia25.2425.0881.65158forward
CNT30708635Quercus lobataGlycine max18.5320.3982.76116forward
CNT30146734Quercus lobataMedicago truncatula30.0330.4283.51188forward
CNT30612524Quercus lobataArabis alpina16.2939.8484.31102forward
CNT30598709Quercus lobataFraxinus excelsior8.4720.4688.6853forward
CNT30423736Quercus lobataPapaver somniferum30.5123.3582.72191forward
CNT30570838Quercus lobataVitis vinifera22.0432.7881.88138forward
CNT30113848Quercus lobataFicus carica28.7523.3283.89180forward

Expression of CNT30698182

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MDAPSKAPPAKMLAPTMKPIAIGAIIPIFPLLLLSK

>peptide 2 (87 aa)
MNELQDGDINNNEAKINNVQIESIANKQKRNNKTSKIMKYQEHGQATWPLVQMTIRLHLILLSLSLSLSLSLSLSKHLSLSIARGDD*

>peptide 3 (39 aa)
MISAEEELVHKASNSTSDQRPNPVDPVVFPVPADQSWPK*

Sequence

>CNT30698182
GGACTATCTAAACAATATATTTTCAGTTTTTAAATAATATTACACACATTTCTACACACTTTTTCACTTATATGTATTTTAAAAAACTACAAACAATATT
ACTCAAACTCCTCTACCAAACAGGCCCAAATGAATGAATTGCAAGATGGTGATATCAACAATAATGAAGCTAAAATCAACAATGTCCAAATTGAAAGCAT
AGCAAACAAACAAAAAAGGAATAATAAGACCTCAAAAATAATGAAATACCAAGAACATGGACAAGCTACATGGCCGTTGGTCCAAATGACCATACGTTTG
CATTTAATATTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAACATCTGAGCTTATCAATTGCTCGTGGTGATGATTAGTGCGGAA
GAAGAACTCGTACACAAGGCCAGCAATTCCACCTCCGATCAAAGGCCCAACCCAGTAGACCCAGTGGTTTTTCCAGTCCCAGCTGACCAAAGCTGGCCCA
AATGACACTGCTGGGTTCATGGATGCCCCATCAAAAGCCCCACCAGCCAAAATGTTGGCACCGACTATGAAACCAATTGCAATTGGTGCAATTATCCCAA
TATTTCCTTTGCTTCTTCTATCCAAG