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Detailed information on CNT30625111


BLAST search results

BLAST vs Swiss-Prot:
sp|P22953|HS701_ARATH, E-value = 9e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696916Daucus carotaOryza sativa29.8487.0382.78302forward
CNT30672831Daucus carotaSetaria viridis10.0834.3487.25102forward
CNT30522780Daucus carotaSetaria italica30.2436.2179.41306forward
CNT30535611Daucus carotaEucalyptus grandis33.213.3784.23336forward
CNT30549087Daucus carotaIpomoea triloba19.1771.5985.57194forward
CNT30515289Daucus carotaJuglans regia22.4347.3981.06227forward
CNT30616016Daucus carotaSesamum indicum8.528.5790.786forward
CNT30490395Daucus carotaOlea europaea33.742.7386.22341forward
CNT30168984Daucus carotaPistacia vera7.91258580forward
CNT30224553Daucus carotaHordeum vulgare15.3274.5285.16155forward
CNT30394524Daucus carotaTriticum turgidum18.2850.2785.95185forward
CNT30568743Daucus carotaActinidia chinensis8.126.2890.2482forward
CNT30588413Daucus carotaMusa acuminata14.8266.3782.67150forward
CNT30510893Daucus carotaSolanum lycopersicum9.9849.2791.09101forward
CNT30440539Daucus carotaAegilops tauschii16.631.7683.33168forward
CNT30613938Daucus carotaArabis alpina20.7581.7188.57210forward
CNT30450032Daucus carotaSaccharum spontaneum17.7922.4782.22180forward
CNT30138690Daucus carotaLolium perenne9.6820.4684.6998forward
CNT305922Daucus carotaZea mays822.0786.4281forward
CNT3067065Daucus carotaLeersia perrieri14.8235.2983.33150forward
CNT30361391Daucus carotaSorghum bicolor29.8436.0879.14302forward
CNT30621132Daucus carotaCajanus cajan12.9422.3987.79131forward
CNT30369286Daucus carotaOryza glumipatula25.8943.8980.53262forward
CNT30154479Daucus carotaPrunus persica10.8725.3590.91110forward
CNT30644072Daucus carotaCannabis sativa22.4350.7887.67227forward
CNT3056582Daucus carotaAmborella trichopoda17.7927.9181.11180forward
CNT30325214Daucus carotaAsparagus officinalis14.1347.6786.71143forward
CNT30150813Daucus carotaBrachypodium distachyon16.629.5385.12168forward
CNT30578076Daucus carotaOryza barthii32.9141.4283.48333forward
CNT30496988Daucus carotaDigitaria exilis32.9134.8379.28333forward
CNT30112072Daucus carotaFicus carica15.6170.5483.54158forward

Expression of CNT30625111

Peptides detected in this lncRNA

>peptide 1 (40 aa)
YIPADTQKIFCSHWNYEFTCRILKIQIIQNNQRLKTSKNP*

>peptide 2 (81 aa)
MSSSSIGAPSPPAPWYIFAMMGLQMLSNSFILSSNSSASASWLLSSHWILPSMASSTLVLSSAESLEAIFSSFTVFLMLYA*

>peptide 3 (44 aa)
MGITSSSLDLKDTLLNSKERHIKSSTTKIKNQDILLTDAGCFFV*

>peptide 4 (38 aa)
MATVIMGFSPGPGVILNGHSLISLCTEASENLLPINLLA

>peptide 5 (43 aa)
MHSSPMHSLLQPSSCVLHPLTCTSQLPGPSSQFPPWRVYPCHW*

Sequence

>CNT30625111
TACATACCAGCTGATACGCAAAAAATATTTTGTTCACATTGGAACTACGAATTCACGTGCAGAATATTAAAAATTCAGATTATCCAAAACAACCAAAGAC
TTAAAACAAGTAAAAACCCATAACTTAGTCGACTTCCTCAATTTTGGGACCAGCGCTGCCTCCAGCACCTGATGGGATGTCATCATCATCCATAGGAGCA
CCTTCACCTCCTGCACCCTGGTACATCTTTGCAATGATGGGGTTGCAGATGCTCTCCAACTCCTTCATTTTGTCTTCAAATTCATCGGCCTCGGCAAGCT
GGTTGCTTTCCAGCCACTGGATACTGCCCTCAATGGCTTCCTCTACCTTGGTCTTGTCATCTGCGGAGAGCTTGGAAGCTATCTTCTCATCCTTCACAGT
GTTCCTCATGTTGTATGCATAGTTCTCCAATGCATTCTTTGCTTCAACCTTCTTCTTGTGTTCTTCATCCTCTGACTTGTACTTCTCAGCTTCCTGGACC
ATCTTCTCAATTTCCTCCTTGGAGAGTCTACCCTTGTCATTGGTGATGTAGAAATCTATGCCCTCAAACAAAGAATCAATCTCAATGGTGGTTTGAGCAG
TGGATGAGAGGGTCCTCTTCGCTCTCTCACAAGATGTTCTCAACCTTCTAAGAGCCCTTGGGTTGCCAGTAATGTCTTTCTTGTTCTTCCTCTTAAATTC
CTGAACAAAGTGGTTAACCATTCTGTTGTCAAAGTCTTCACCACCGAGATGGGTATCACCAGCAGTAGCCTTGACCTCAAAGATACCCTCCTCAATAGTA
AGGAGAGACACATCAAAAGTTCCACCACCAAGATCAAAAATCAAGACATTCTTCTCACCGACGCTGGTTGCTTTTTTGTCTAGACCATAAGCAATGGCAA
CTGTGATCATGGGTTTCTCGCCAGGTCCAGGGGTGATTTTGAATGGCCATAGCTTAATATCACTCTGCACAGAGGCATCAGAGAATCTCCTGCCTATCAA
CCTCTTGGCATC