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Detailed information on CNT3056582


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696916Amborella trichopodaOryza sativa21.2439.4885.4137forward
CNT30672831Amborella trichopodaSetaria viridis12.8727.9585.5483forward
CNT30515289Amborella trichopodaJuglans regia22.4830.2784.14145forward
CNT30490395Amborella trichopodaOlea europaea27.622.3183.15178forward
CNT30392820Amborella trichopodaTriticum turgidum31.942781.07206forward
CNT30510806Amborella trichopodaSolanum lycopersicum13.0229.0783.3384forward
CNT3061823Amborella trichopodaArabidopsis lyrata21.7119.282.14140forward
CNT30614007Amborella trichopodaArabis alpina22.3323.888.19144forward
CNT30138690Amborella trichopodaLolium perenne20.7827.9785.07134forward
CNT305922Amborella trichopodaZea mays12.5622.0785.1981forward
CNT30625111Amborella trichopodaDaucus carota27.9117.7981.11180forward
CNT30361391Amborella trichopodaSorghum bicolor22.0216.9784.51142forward
CNT30360803Amborella trichopodaLactuca sativa21.8618.2985.82141forward
CNT30154479Amborella trichopodaPrunus persica17.5226.0484.07113forward
CNT30572753Amborella trichopodaVitis vinifera22.0210.1183.8142forward
CNT30578076Amborella trichopodaOryza barthii22.0217.6684.51142forward
CNT30496988Amborella trichopodaDigitaria exilis22.0214.8581.69142forward

Expression of CNT3056582

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAIWGGGIVFTKYKKQAPWIEKEEKKLLNRPPRSWGQHHHRC*

>peptide 2 (36 aa)
MSMQSKAAHNPKTKIENGNMGRGNCLHQIQKTSTMD*

>peptide 3 (29 aa)
MMMERVQMQRVQRQSSHNHYCIQINKINK*

Sequence

>CNT3056582
GAATGATGATGGAAAGAGTTCAGATGCAAAGAGTTCAGAGACAATCGAGTCACAACCATTACTGCATCCAAATAAATAAGATTAACAAATAAAAACCAAC
ACGCACACATATGAAAAAAAACTAACTCTATTTAGTTATCCACCAATTTCCCACGGGAATATATTTTATCAAATCCAGCCAAAAAAGGCAATTGGCCCAT
TAGAAAAGGCCGCCGACCAACTATACCAAAAAGAACTAGTTCAAGAGTATTCGATGAGCATGCAATCAAAAGCAGCTCATAATCCCAAAACAAAAATAGA
GAATGGCAATATGGGGAGGGGGAATTGTCTTCACCAAATACAAAAAACAAGCACCATGGATTGAAAAAGAGGAGAAAAAATTGCTTAATCGACCTCCTCG
ATCTTGGGGCCAGCACCACCACCGCTGCTGAAGGACTCACCACCAGGCATATCAGCCCCACCAGCCTGATACATCTTAGCAATGATGGGGTTGCAAATGG
TCTCGAGCTCCTTCATCTTGTCCTCAAACTCATCTGCCTCAGCCAACTGGTTGTTGTCGAGCCATTGAATTGCCTGCTCAATGGCATCCTCTATCTTCTT
CTTGTCAGCAGCATCGAGCTTGGCAGCAATCTTGTCATCCTTGAT