Detailed information on CNT30613938


BLAST search results

BLAST vs Swiss-Prot:
sp|P27322|HSP72_SOLLC, E-value = 1e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535611Arabis alpinaEucalyptus grandis92.229.4388.61237forward
CNT30549087Arabis alpinaIpomoea triloba39.337.2789.11101forward
CNT30515000Arabis alpinaJuglans regia24.519.9590.4863forward
CNT30224553Arabis alpinaHordeum vulgare26.8533.1792.7569forward
CNT30394524Arabis alpinaTriticum turgidum70.4349.1886.74181forward
CNT30510956Arabis alpinaSolanum lycopersicum35.834.4692.3992forward
CNT30625111Arabis alpinaDaucus carota81.7120.7588.57210forward
CNT30367262Arabis alpinaSorghum bicolor28.7911.8287.8474forward
CNT30644072Arabis alpinaCannabis sativa75.8843.6287.18195forward
CNT30325214Arabis alpinaAsparagus officinalis26.4622.6785.2968forward
CNT30112072Arabis alpinaFicus carica44.3650.8983.33114forward

Expression of CNT30613938

Peptides detected in this lncRNA

>peptide 1 (84 aa)
QRYLPLKLLNKVVNHSVVKILTTKMSVTSSCLNLKDTFLNGQKRHIKSTTTKIKDQHVLLTNTGCLLVQTVSNSCSGWLINDSHN

>peptide 2 (31 aa)
MVKRDTSKVPPPRSKINTFFSPTLVAFLSKP*

Sequence

>CNT30613938
CTCAAAGATACCTTCCTCTTAAACTCCTGAACAAAGTGGTTAACCATTCTGTTGTCAAAATCCTCACCACCAAGATGAGTGTCACCAGCAGTTGCCTTAA
CCTCAAAGATACCTTCCTCAATGGTCAAAAGAGACACATCAAAAGTACCACCACCAAGATCAAAGATCAACACGTTCTTCTCACCAACACTGGTTGCCTT
CTTGTCCAAACCGTAAGCAATAGCTGCAGCGGTTGGCTCATTAATGATTCTCATAAC